| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is mrcA [H]
Identifier: 197105303
GI number: 197105303
Start: 2060044
End: 2062416
Strand: Reverse
Name: mrcA [H]
Synonym: PHZ_c1840
Alternate gene names: 197105303
Gene position: 2062416-2060044 (Counterclockwise)
Preceding gene: 197105304
Following gene: 197105302
Centisome position: 51.61
GC content: 70.29
Gene sequence:
>2373_bases ATGGCCGGCGTTGTGGTGCTGAGCCTCGTCGCTCTGGCCGCCTTCTCCGCCGCGATCTACGCGGCCTGGCTGTTCCATGA CATGCCGGACGCCGGGGAATTGGTGGACTACCACCCGCCCACGGCCACGCGCGCCTACGCCTGGGACGGCACCCTGATCG GCGAGTTCTCGCGCGAGCGGCGCATCTTCGTGCCCTACGACGCCATCCCCGCCCAGACGGCGCAGGCGTTCCTCGCCGCC GAAGACCACAGCTTCTTCCGGCATGCGGGCGTGGACGTAAGCGGCCTGGGCCGCGCCATGGCCAAGAACGTCCTCAACCT CGTCCAGGGCCGGCGCCTCGAAGGCGGCTCGACCATCACCCAGCAGGTGGCCAAGAACATCCTGCTGACGAGCGACGCCA CCATCGGGCGCAAGCTGAAGGAGGCGATCCTCGCCGGCCAGCTCGAGCAGACGCTGACCAAGGAGCGGATCCTCGAGCTC TATCTGAACGAGATCTGGCTGGGCTACCGATCGTACGGGGTGGGCGCCGCGGCCTACAACTACTTCGGCAAGTCGGTGAG CGAGCTGACCCTGGCCGAGAGCGCCTATCTGGCCGCCCTGCCGAAGGGGCCCGACAACTACCACCCGATGCGCCGCAAGC GTCAGGCCATCGCCCGCCGCAACTGGGTGATCGACCAGATGGCCGACCTCGGGATGATCAGCCGGGAAGAGGCGCGCGCC GCCATGGCCGAGGACCTGAAGGTCCAGCCCGCGCCGACCCGGGCGCAGTACCGCGACGCCGACTACTTCGTGGAAGAGGT CCGCCGCCTGGGCCTCAACATGGACGAGCTGGGCGACGAGCGCCTGAACGCCGGCGGCTACTACATCCGCACGACGCTGG ACCCGCGCCTGCAGAGCGCCGCGCGGCTGGCGCTGATGAACGGACTGGAGGCCTACGACCGCCGCCACGGCTGGCGCGGC GCCTGGGGCAACGTCACGACCCTGGCCGACTGGGAGAAGGAGGCCAAGAAGAAGGCCCTCCCGTCCGAGCGGCGCAGCTG GCGCCAGGCCGTCGTGACCAGCGTCGCTGGCGGCAACGTCGAGGTGCTGACCGTCGACGGCGACCGCGGCGCCCTGGCCG GCGAGGACGTGGCCTGGGCCCGGCGCGGGAAGGGGATCGGCACCGGCGACCTGGTCTTCGTGGCGCCGAATGACAAGGGC GCGGGCTTCCGCCTGAAGCAGATCCCGGCGGTGAACGGCGCCCTCGTTGCCATGGAGCCCAATTCGGGCCGGGTGCTGGC GATGGTCGGCGGCTATTCGTTCTCGCTGTCCAGTTTCAACCGGGCCACTCAGGCCTACCGGCAGCCCGGCTCGGCCTTCA AGCCGATCGTCTACGCCGCGGCCCTTGAGAGCGGCTACACGCCCGCCAGCACTGTCATGGACGCGCCGATCACCCTGCGC GGGGCCGGCGGCCAGGCCTGGTCGCCCGAGAACTACAATCGCAAGTACTATGGCGCGCTGACGCTGCGCCGGGGGTTGGA GCTGTCGCGCAACACCATGACGGTGCGCCTGGCCCAGAACGTCGGCATGACCCGGATCAGCGACCTGGCGATCCGCATGG GCGTGACCGAGAAGATGGACAAGGTGCTCGCCATGGCCCTCGGCTCGGGCGAGACGACCGTCTACCGGATGTCGGCGGCC TACTCCTCGTTCCTGAACGGCGGCCGCAAGGTCGAGCCGCACCTGATCGAGCTGGTCCAGGACCGCAACGGCAAGGTCAT CTGGAAGGCCGACCGCCGGGAATGCCCGCGCTGCGGCGCCGGTTTCTCGGGCGCCGAAAGCCCGCGCATCGCGCGCACCG GCGCCCAGGTGATGGATCCGATCACCGCCTACCAGATCACCTCCATGCTGGAAGGCGTGGTCCTGCGGGGCACGGCGACC CAGGCCTCGTCCGTCGGCAAGCCGCTGGGCGGCAAGACCGGCACGACCAACGACTACCGCTCGGCCTGGTTCATGGGCTT CTCGCCGGACATCGTCGTGGGCGTTTACATCGGCTTCGACGACAACCGCAGCCTGGGCGAGGGCGAGACGGGCAGCGTCG CGGCCGTGCCGATCTTCACCGAGTTCATGGGCGAGGCGCTTAAGGACCGGCCGGCCCAGCCGTTCAAGGCGCCCGCCAAC GCCAAGTTCGCCATGGTGCGGGGAATCCGCGAGGCCTTCCGGCCCGGAACCGAGCCGCAGGTCGCCCAGGCGCCGGCGAG CGCCGTGCCGGGCGGGCCGCAGCCCTACAGCCAGGTCTGGCAGAACGGCATCACGGGCGCCCCGAACGCCGGGGCGGCCG TGGCGCCGCCTCCGCCGCCGAAGAAGCAGGACGAGCTGTCGGACTTGTTCTGA
Upstream 100 bases:
>100_bases GGCCCGACACAGGGTAGACGACGCCTCATAAGGTGGACGCGGCGCCCCCGGAGGCTCGTCTAAGTTGAACTCCCCCGCAG GACCCGAACGGTGGGTCGCG
Downstream 100 bases:
>100_bases CGCGGGACGCAGACTATGTCCGGCCGCCTGAAGTCCGGAGTTCCCCATGAGAGTGGATGTCGAGGCCGCCAAGGCCGACA TCGAGCAGTCGATCGAACTG
Product: penicillin-binding protein, 1A family
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 790; Mature: 789
Protein sequence:
>790_residues MAGVVVLSLVALAAFSAAIYAAWLFHDMPDAGELVDYHPPTATRAYAWDGTLIGEFSRERRIFVPYDAIPAQTAQAFLAA EDHSFFRHAGVDVSGLGRAMAKNVLNLVQGRRLEGGSTITQQVAKNILLTSDATIGRKLKEAILAGQLEQTLTKERILEL YLNEIWLGYRSYGVGAAAYNYFGKSVSELTLAESAYLAALPKGPDNYHPMRRKRQAIARRNWVIDQMADLGMISREEARA AMAEDLKVQPAPTRAQYRDADYFVEEVRRLGLNMDELGDERLNAGGYYIRTTLDPRLQSAARLALMNGLEAYDRRHGWRG AWGNVTTLADWEKEAKKKALPSERRSWRQAVVTSVAGGNVEVLTVDGDRGALAGEDVAWARRGKGIGTGDLVFVAPNDKG AGFRLKQIPAVNGALVAMEPNSGRVLAMVGGYSFSLSSFNRATQAYRQPGSAFKPIVYAAALESGYTPASTVMDAPITLR GAGGQAWSPENYNRKYYGALTLRRGLELSRNTMTVRLAQNVGMTRISDLAIRMGVTEKMDKVLAMALGSGETTVYRMSAA YSSFLNGGRKVEPHLIELVQDRNGKVIWKADRRECPRCGAGFSGAESPRIARTGAQVMDPITAYQITSMLEGVVLRGTAT QASSVGKPLGGKTGTTNDYRSAWFMGFSPDIVVGVYIGFDDNRSLGEGETGSVAAVPIFTEFMGEALKDRPAQPFKAPAN AKFAMVRGIREAFRPGTEPQVAQAPASAVPGGPQPYSQVWQNGITGAPNAGAAVAPPPPPKKQDELSDLF
Sequences:
>Translated_790_residues MAGVVVLSLVALAAFSAAIYAAWLFHDMPDAGELVDYHPPTATRAYAWDGTLIGEFSRERRIFVPYDAIPAQTAQAFLAA EDHSFFRHAGVDVSGLGRAMAKNVLNLVQGRRLEGGSTITQQVAKNILLTSDATIGRKLKEAILAGQLEQTLTKERILEL YLNEIWLGYRSYGVGAAAYNYFGKSVSELTLAESAYLAALPKGPDNYHPMRRKRQAIARRNWVIDQMADLGMISREEARA AMAEDLKVQPAPTRAQYRDADYFVEEVRRLGLNMDELGDERLNAGGYYIRTTLDPRLQSAARLALMNGLEAYDRRHGWRG AWGNVTTLADWEKEAKKKALPSERRSWRQAVVTSVAGGNVEVLTVDGDRGALAGEDVAWARRGKGIGTGDLVFVAPNDKG AGFRLKQIPAVNGALVAMEPNSGRVLAMVGGYSFSLSSFNRATQAYRQPGSAFKPIVYAAALESGYTPASTVMDAPITLR GAGGQAWSPENYNRKYYGALTLRRGLELSRNTMTVRLAQNVGMTRISDLAIRMGVTEKMDKVLAMALGSGETTVYRMSAA YSSFLNGGRKVEPHLIELVQDRNGKVIWKADRRECPRCGAGFSGAESPRIARTGAQVMDPITAYQITSMLEGVVLRGTAT QASSVGKPLGGKTGTTNDYRSAWFMGFSPDIVVGVYIGFDDNRSLGEGETGSVAAVPIFTEFMGEALKDRPAQPFKAPAN AKFAMVRGIREAFRPGTEPQVAQAPASAVPGGPQPYSQVWQNGITGAPNAGAAVAPPPPPKKQDELSDLF >Mature_789_residues AGVVVLSLVALAAFSAAIYAAWLFHDMPDAGELVDYHPPTATRAYAWDGTLIGEFSRERRIFVPYDAIPAQTAQAFLAAE DHSFFRHAGVDVSGLGRAMAKNVLNLVQGRRLEGGSTITQQVAKNILLTSDATIGRKLKEAILAGQLEQTLTKERILELY LNEIWLGYRSYGVGAAAYNYFGKSVSELTLAESAYLAALPKGPDNYHPMRRKRQAIARRNWVIDQMADLGMISREEARAA MAEDLKVQPAPTRAQYRDADYFVEEVRRLGLNMDELGDERLNAGGYYIRTTLDPRLQSAARLALMNGLEAYDRRHGWRGA WGNVTTLADWEKEAKKKALPSERRSWRQAVVTSVAGGNVEVLTVDGDRGALAGEDVAWARRGKGIGTGDLVFVAPNDKGA GFRLKQIPAVNGALVAMEPNSGRVLAMVGGYSFSLSSFNRATQAYRQPGSAFKPIVYAAALESGYTPASTVMDAPITLRG AGGQAWSPENYNRKYYGALTLRRGLELSRNTMTVRLAQNVGMTRISDLAIRMGVTEKMDKVLAMALGSGETTVYRMSAAY SSFLNGGRKVEPHLIELVQDRNGKVIWKADRRECPRCGAGFSGAESPRIARTGAQVMDPITAYQITSMLEGVVLRGTATQ ASSVGKPLGGKTGTTNDYRSAWFMGFSPDIVVGVYIGFDDNRSLGEGETGSVAAVPIFTEFMGEALKDRPAQPFKAPANA KFAMVRGIREAFRPGTEPQVAQAPASAVPGGPQPYSQVWQNGITGAPNAGAAVAPPPPPKKQDELSDLF
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=806, Percent_Identity=34.3672456575682, Blast_Score=392, Evalue=1e-110, Organism=Escherichia coli, GI1786343, Length=270, Percent_Identity=34.8148148148148, Blast_Score=135, Evalue=1e-32, Organism=Escherichia coli, GI1788867, Length=205, Percent_Identity=36.0975609756098, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1789601, Length=169, Percent_Identity=38.4615384615385, Blast_Score=98, Evalue=3e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 85555; Mature: 85424
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGVVVLSLVALAAFSAAIYAAWLFHDMPDAGELVDYHPPTATRAYAWDGTLIGEFSRER CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCC RIFVPYDAIPAQTAQAFLAAEDHSFFRHAGVDVSGLGRAMAKNVLNLVQGRRLEGGSTIT EEEECCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH QQVAKNILLTSDATIGRKLKEAILAGQLEQTLTKERILELYLNEIWLGYRSYGVGAAAYN HHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH YFGKSVSELTLAESAYLAALPKGPDNYHPMRRKRQAIARRNWVIDQMADLGMISREEARA HHCCCHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH AMAEDLKVQPAPTRAQYRDADYFVEEVRRLGLNMDELGDERLNAGGYYIRTTLDPRLQSA HHHHCCCCCCCCCCCHHCCHHHHHHHHHHHCCCHHHHCHHHCCCCCEEEEEECCHHHHHH ARLALMNGLEAYDRRHGWRGAWGNVTTLADWEKEAKKKALPSERRSWRQAVVTSVAGGNV HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCE EVLTVDGDRGALAGEDVAWARRGKGIGTGDLVFVAPNDKGAGFRLKQIPAVNGALVAMEP EEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCEEEEECC NSGRVLAMVGGYSFSLSSFNRATQAYRQPGSAFKPIVYAAALESGYTPASTVMDAPITLR CCCEEEEEECCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHCCCCEEEE GAGGQAWSPENYNRKYYGALTLRRGLELSRNTMTVRLAQNVGMTRISDLAIRMGVTEKMD CCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHH KVLAMALGSGETTVYRMSAAYSSFLNGGRKVEPHLIELVQDRNGKVIWKADRRECPRCGA HHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCC GFSGAESPRIARTGAQVMDPITAYQITSMLEGVVLRGTATQASSVGKPLGGKTGTTNDYR CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCEEEECCCHHHHHCCCCCCCCCCCCCCCC SAWFMGFSPDIVVGVYIGFDDNRSLGEGETGSVAAVPIFTEFMGEALKDRPAQPFKAPAN CEEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCC AKFAMVRGIREAFRPGTEPQVAQAPASAVPGGPQPYSQVWQNGITGAPNAGAAVAPPPPP CHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC KKQDELSDLF CCCHHHHHCC >Mature Secondary Structure AGVVVLSLVALAAFSAAIYAAWLFHDMPDAGELVDYHPPTATRAYAWDGTLIGEFSRER HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCC RIFVPYDAIPAQTAQAFLAAEDHSFFRHAGVDVSGLGRAMAKNVLNLVQGRRLEGGSTIT EEEECCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH QQVAKNILLTSDATIGRKLKEAILAGQLEQTLTKERILELYLNEIWLGYRSYGVGAAAYN HHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH YFGKSVSELTLAESAYLAALPKGPDNYHPMRRKRQAIARRNWVIDQMADLGMISREEARA HHCCCHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH AMAEDLKVQPAPTRAQYRDADYFVEEVRRLGLNMDELGDERLNAGGYYIRTTLDPRLQSA HHHHCCCCCCCCCCCHHCCHHHHHHHHHHHCCCHHHHCHHHCCCCCEEEEEECCHHHHHH ARLALMNGLEAYDRRHGWRGAWGNVTTLADWEKEAKKKALPSERRSWRQAVVTSVAGGNV HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCE EVLTVDGDRGALAGEDVAWARRGKGIGTGDLVFVAPNDKGAGFRLKQIPAVNGALVAMEP EEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCEEEEECC NSGRVLAMVGGYSFSLSSFNRATQAYRQPGSAFKPIVYAAALESGYTPASTVMDAPITLR CCCEEEEEECCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHCCCCEEEE GAGGQAWSPENYNRKYYGALTLRRGLELSRNTMTVRLAQNVGMTRISDLAIRMGVTEKMD CCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHH KVLAMALGSGETTVYRMSAAYSSFLNGGRKVEPHLIELVQDRNGKVIWKADRRECPRCGA HHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCC GFSGAESPRIARTGAQVMDPITAYQITSMLEGVVLRGTATQASSVGKPLGGKTGTTNDYR CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCEEEECCCHHHHHCCCCCCCCCCCCCCCC SAWFMGFSPDIVVGVYIGFDDNRSLGEGETGSVAAVPIFTEFMGEALKDRPAQPFKAPAN CEEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCC AKFAMVRGIREAFRPGTEPQVAQAPASAVPGGPQPYSQVWQNGITGAPNAGAAVAPPPPP CHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC KKQDELSDLF CCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]