| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197105197
Identifier: 197105197
GI number: 197105197
Start: 1942749
End: 1945034
Strand: Reverse
Name: 197105197
Synonym: PHZ_c1734
Alternate gene names: NA
Gene position: 1945034-1942749 (Counterclockwise)
Preceding gene: 197105199
Following gene: 197105195
Centisome position: 48.67
GC content: 72.0
Gene sequence:
>2286_bases ATGACCACGCTCGCCGCCGGGACCCGCCGGGCCTATGCGCCGCCGGCCCTGTTCGCCGTGACGACCTTTTCCAGCGCCGC GCTGGTCTTCCTGGTCCAGCCGATGGTGGCCAAGCTGGTCCTGCCGCTGCTGGGCGGGAGCCCCTCGGTGTGGAACACCA GCATGGCGTTCTTCCAGCTGGCCCTGCTGGTCGGCTACTTCTACGCCCACGCCCTGCAGAGGATAGCCTCGGTCGGCCGG CAGGTGGTCGTGCACTGCGCCGCCCTGCTGGTCGCCGCCGCGGCCCTGCCGCTGCGGGTGAACGAATGGGTCGGCGCGCC CTCGTCGGAGCACCCGAACCTGTGGCTGCTGGCGGTGCTGGCGCTGTCCATCGGCGCCCCCTTCGCCATCCTCTCGGCCA CCGCCCCGCTGGTCCAGGCCTGGTACGCCCGCACGGTGGGCCAGGCCGAGGGCAAGGAGCCCTATGTCCTCTACGCCGCC AGCAACCTGGGCAGCCTGCTGGCGCTGCTGGCCTATCCGCTGGTCGTGGAACCCGCCTTCTCGCTGTGGGGCCAGCGCTA CGGCTGGAGCGCCGGCTACCTGGGCTTCCTGCTGCTGATGGCGACCCTCGGGCTGCTGGTGACGCGGGTCCGCGCCGCCG CGCCCGCGGCGCCGCCCCGAGCTGTCGCCCCCGCGAGCTGGAGCGACCGGCTGGCGTGGATCGGCCTGGCCGCCATCCCG GCCAGCCTGATGCTGGGGGTGACCACCCACATCACCACGGACGTGGCCTCGGCGCCGTTCCTGTGGGTGCTGCCCCTGGC GCTCTACCTGCTCACCTTCATCATCGCCTTCCAGGCCAGGCCCGCCATCTCGCCCGCGCTCACGCTGGTGCTGCAGGCGG CGGCGGTGGCGGCCTGCGCGGCCCTGCTGCCGTTCCGCTCGACGTTCTTCGCGCTGCAGTTCGGGGTGCACCTGATCGCG TTCTTCCTGACCGCGCTGATGTGCCACCAGCGGCTGGTGGCGCGCCGGCCCGACCCGGCGCACCTGACCGAATTCTACCT GTGCCTCTCGATCGGCGGGGTCGTCGGCGGCGCGTTCAACGCCTTCGTGGCGCCGGTCGTCTTCACCAACGTCTGGGAGT ACCCGCTGGTGCTGGCGCTCTCGTGCCTGGCGCGCCCCTGGGGACGGCTCGACAAGGTCCCGCCGGGCCAATGGGTGCTG CTGGTGGTGGGCGTGCTGGCGGCGGCCGCCACGCCGGTGGCCGTCACCTTCGCCCAGGGCAACCTCTCCACCGCCAGCGT GGTGGGGGCGTTCGACCAGTCCGAACTGTTCGACCTGGGCATGAAGACCCTGCTGATCCTGGCGGTGATCTGCGCCTTCC TCGTGCGGCGCCGGGCCCTGTTCTTCTTCCTGGTGATCGGCGTGCTGTCGTTCGCCGCCGAGGCCGCCGCCGACCGCACC GACGTGCGCCAGAGCTGGCGCAGCTTCTTCGGCGTGATGCGCCAGTCCCAGACCTACGTCTCCTCGCTGGGCGGGGAGGT GAAGATGCTGGCGCACGGGACCACGCTGCACGGCGCCCAGGCGCTGAATCCGGCGTACCGCTGCAACCCGCTCGTCTACT ACACGCCGCGCACGCCGATCGGTCAGGTCTTCACGGGCCTGCAGGGCGCGCGTGCGGCGATGCGCATCGGCGCCGTGGGC CTCGGCACCGGCTCGGTCGCAGCCTATGCGCGCGCGGGCGACCACCTGACGTTCTTCGAGATCGATCCGCTGGTGGTGCG GGTCTCGAGCGATCCGGCGCACTTCAGCTACACGACCGAGTGCGCGAAGGGGCGGGTGGACTATGTCATCGGCGACGCCC GGCTCACCCTGTCCCGGCAGCCGCCGGCGACCTTCGACCTGCTGCTGATCGACGCCTTCTCGTCCGACGCCGTGCCGGCC CACCTGCTGACCGTCGAGGCGGTGCAGACCTACCTCGAGCGGCTGACGCCCGACGGGGTGCTGATCCTGCACCTGTCGAA CCGCAACCTCGACCTGATGGGACCGGCCCAGGCCGTGGCCAGGGCCGCGGGCGGCTACGCCCTGGCGCAGAACTACCGCC CCGACGAGGACCCGCAGGGCAGCTGGGAGTCGGCCGAGGACGTGGTGATCGTGGCGAAGAACCGCGCGGCGCTCGCCGCG TTCGAGGCCGATCCGCGCTGGACCCGCGCCAATCCGTTCCTGGCCCGGCCCTGGCGCGACGACTACACGAACCTGGCCGG GGCGCTCTACGCCAACCTCAAGACCCGCTGGACCTGGCTGCCGTAG
Upstream 100 bases:
>100_bases GGTGACGATCTCCAAGGAAAACATCGGCGCACGTCCCCTTAACCGCTAATGCTCGACCACAAGCATTCCAGCCCCGCTTC GATCAAGGCCTAACGACGAC
Downstream 100 bases:
>100_bases CCGTCAGGGCGGGCATTCGACCGCGACGACGGCCTGGGCCATCAGGCCTTCCTCGCGGCCGGTGAAGCCCATGCCCTCGG TCGTGGTGGCCTTCACGCTG
Product: putative spermine/spermidine synthase protein
Products: NA
Alternate protein names: Spermine/Spermidine Synthase Protein; Integral Membrane Protein-Like; Ferrichrome ABC Transporter Permease; Integral Membrane Protein
Number of amino acids: Translated: 761; Mature: 760
Protein sequence:
>761_residues MTTLAAGTRRAYAPPALFAVTTFSSAALVFLVQPMVAKLVLPLLGGSPSVWNTSMAFFQLALLVGYFYAHALQRIASVGR QVVVHCAALLVAAAALPLRVNEWVGAPSSEHPNLWLLAVLALSIGAPFAILSATAPLVQAWYARTVGQAEGKEPYVLYAA SNLGSLLALLAYPLVVEPAFSLWGQRYGWSAGYLGFLLLMATLGLLVTRVRAAAPAAPPRAVAPASWSDRLAWIGLAAIP ASLMLGVTTHITTDVASAPFLWVLPLALYLLTFIIAFQARPAISPALTLVLQAAAVAACAALLPFRSTFFALQFGVHLIA FFLTALMCHQRLVARRPDPAHLTEFYLCLSIGGVVGGAFNAFVAPVVFTNVWEYPLVLALSCLARPWGRLDKVPPGQWVL LVVGVLAAAATPVAVTFAQGNLSTASVVGAFDQSELFDLGMKTLLILAVICAFLVRRRALFFFLVIGVLSFAAEAAADRT DVRQSWRSFFGVMRQSQTYVSSLGGEVKMLAHGTTLHGAQALNPAYRCNPLVYYTPRTPIGQVFTGLQGARAAMRIGAVG LGTGSVAAYARAGDHLTFFEIDPLVVRVSSDPAHFSYTTECAKGRVDYVIGDARLTLSRQPPATFDLLLIDAFSSDAVPA HLLTVEAVQTYLERLTPDGVLILHLSNRNLDLMGPAQAVARAAGGYALAQNYRPDEDPQGSWESAEDVVIVAKNRAALAA FEADPRWTRANPFLARPWRDDYTNLAGALYANLKTRWTWLP
Sequences:
>Translated_761_residues MTTLAAGTRRAYAPPALFAVTTFSSAALVFLVQPMVAKLVLPLLGGSPSVWNTSMAFFQLALLVGYFYAHALQRIASVGR QVVVHCAALLVAAAALPLRVNEWVGAPSSEHPNLWLLAVLALSIGAPFAILSATAPLVQAWYARTVGQAEGKEPYVLYAA SNLGSLLALLAYPLVVEPAFSLWGQRYGWSAGYLGFLLLMATLGLLVTRVRAAAPAAPPRAVAPASWSDRLAWIGLAAIP ASLMLGVTTHITTDVASAPFLWVLPLALYLLTFIIAFQARPAISPALTLVLQAAAVAACAALLPFRSTFFALQFGVHLIA FFLTALMCHQRLVARRPDPAHLTEFYLCLSIGGVVGGAFNAFVAPVVFTNVWEYPLVLALSCLARPWGRLDKVPPGQWVL LVVGVLAAAATPVAVTFAQGNLSTASVVGAFDQSELFDLGMKTLLILAVICAFLVRRRALFFFLVIGVLSFAAEAAADRT DVRQSWRSFFGVMRQSQTYVSSLGGEVKMLAHGTTLHGAQALNPAYRCNPLVYYTPRTPIGQVFTGLQGARAAMRIGAVG LGTGSVAAYARAGDHLTFFEIDPLVVRVSSDPAHFSYTTECAKGRVDYVIGDARLTLSRQPPATFDLLLIDAFSSDAVPA HLLTVEAVQTYLERLTPDGVLILHLSNRNLDLMGPAQAVARAAGGYALAQNYRPDEDPQGSWESAEDVVIVAKNRAALAA FEADPRWTRANPFLARPWRDDYTNLAGALYANLKTRWTWLP >Mature_760_residues TTLAAGTRRAYAPPALFAVTTFSSAALVFLVQPMVAKLVLPLLGGSPSVWNTSMAFFQLALLVGYFYAHALQRIASVGRQ VVVHCAALLVAAAALPLRVNEWVGAPSSEHPNLWLLAVLALSIGAPFAILSATAPLVQAWYARTVGQAEGKEPYVLYAAS NLGSLLALLAYPLVVEPAFSLWGQRYGWSAGYLGFLLLMATLGLLVTRVRAAAPAAPPRAVAPASWSDRLAWIGLAAIPA SLMLGVTTHITTDVASAPFLWVLPLALYLLTFIIAFQARPAISPALTLVLQAAAVAACAALLPFRSTFFALQFGVHLIAF FLTALMCHQRLVARRPDPAHLTEFYLCLSIGGVVGGAFNAFVAPVVFTNVWEYPLVLALSCLARPWGRLDKVPPGQWVLL VVGVLAAAATPVAVTFAQGNLSTASVVGAFDQSELFDLGMKTLLILAVICAFLVRRRALFFFLVIGVLSFAAEAAADRTD VRQSWRSFFGVMRQSQTYVSSLGGEVKMLAHGTTLHGAQALNPAYRCNPLVYYTPRTPIGQVFTGLQGARAAMRIGAVGL GTGSVAAYARAGDHLTFFEIDPLVVRVSSDPAHFSYTTECAKGRVDYVIGDARLTLSRQPPATFDLLLIDAFSSDAVPAH LLTVEAVQTYLERLTPDGVLILHLSNRNLDLMGPAQAVARAAGGYALAQNYRPDEDPQGSWESAEDVVIVAKNRAALAAF EADPRWTRANPFLARPWRDDYTNLAGALYANLKTRWTWLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81618; Mature: 81487
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLAAGTRRAYAPPALFAVTTFSSAALVFLVQPMVAKLVLPLLGGSPSVWNTSMAFFQL CCCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ALLVGYFYAHALQRIASVGRQVVVHCAALLVAAAALPLRVNEWVGAPSSEHPNLWLLAVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHCCCCCCCCCCHHHHHHH ALSIGAPFAILSATAPLVQAWYARTVGQAEGKEPYVLYAASNLGSLLALLAYPLVVEPAF HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH SLWGQRYGWSAGYLGFLLLMATLGLLVTRVRAAAPAAPPRAVAPASWSDRLAWIGLAAIP HHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH ASLMLGVTTHITTDVASAPFLWVLPLALYLLTFIIAFQARPAISPALTLVLQAAAVAACA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH ALLPFRSTFFALQFGVHLIAFFLTALMCHQRLVARRPDPAHLTEFYLCLSIGGVVGGAFN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AFVAPVVFTNVWEYPLVLALSCLARPWGRLDKVPPGQWVLLVVGVLAAAATPVAVTFAQG HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC NLSTASVVGAFDQSELFDLGMKTLLILAVICAFLVRRRALFFFLVIGVLSFAAEAAADRT CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH DVRQSWRSFFGVMRQSQTYVSSLGGEVKMLAHGTTLHGAQALNPAYRCNPLVYYTPRTPI HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCHHHCCCCHHCCCEEEECCCCCH GQVFTGLQGARAAMRIGAVGLGTGSVAAYARAGDHLTFFEIDPLVVRVSSDPAHFSYTTE HHHHHCHHHHHHHHHHCCEECCCCCHHHHHHCCCCEEEEEECCEEEEECCCCCCCEEEHH CAKGRVDYVIGDARLTLSRQPPATFDLLLIDAFSSDAVPAHLLTVEAVQTYLERLTPDGV HHCCCEEEEEECEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCE LILHLSNRNLDLMGPAQAVARAAGGYALAQNYRPDEDPQGSWESAEDVVIVAKNRAALAA EEEEECCCCEEECCHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCEEEEECCCEEEEE FEADPRWTRANPFLARPWRDDYTNLAGALYANLKTRWTWLP ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCC >Mature Secondary Structure TTLAAGTRRAYAPPALFAVTTFSSAALVFLVQPMVAKLVLPLLGGSPSVWNTSMAFFQL CCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH ALLVGYFYAHALQRIASVGRQVVVHCAALLVAAAALPLRVNEWVGAPSSEHPNLWLLAVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHCCCCCCCCCCHHHHHHH ALSIGAPFAILSATAPLVQAWYARTVGQAEGKEPYVLYAASNLGSLLALLAYPLVVEPAF HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH SLWGQRYGWSAGYLGFLLLMATLGLLVTRVRAAAPAAPPRAVAPASWSDRLAWIGLAAIP HHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH ASLMLGVTTHITTDVASAPFLWVLPLALYLLTFIIAFQARPAISPALTLVLQAAAVAACA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH ALLPFRSTFFALQFGVHLIAFFLTALMCHQRLVARRPDPAHLTEFYLCLSIGGVVGGAFN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AFVAPVVFTNVWEYPLVLALSCLARPWGRLDKVPPGQWVLLVVGVLAAAATPVAVTFAQG HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC NLSTASVVGAFDQSELFDLGMKTLLILAVICAFLVRRRALFFFLVIGVLSFAAEAAADRT CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH DVRQSWRSFFGVMRQSQTYVSSLGGEVKMLAHGTTLHGAQALNPAYRCNPLVYYTPRTPI HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCHHHCCCCHHCCCEEEECCCCCH GQVFTGLQGARAAMRIGAVGLGTGSVAAYARAGDHLTFFEIDPLVVRVSSDPAHFSYTTE HHHHHCHHHHHHHHHHCCEECCCCCHHHHHHCCCCEEEEEECCEEEEECCCCCCCEEEHH CAKGRVDYVIGDARLTLSRQPPATFDLLLIDAFSSDAVPAHLLTVEAVQTYLERLTPDGV HHCCCEEEEEECEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCE LILHLSNRNLDLMGPAQAVARAAGGYALAQNYRPDEDPQGSWESAEDVVIVAKNRAALAA EEEEECCCCEEECCHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCEEEEECCCEEEEE FEADPRWTRANPFLARPWRDDYTNLAGALYANLKTRWTWLP ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA