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The map label for this gene is sufC [H]

Identifier: 197105182

GI number: 197105182

Start: 1926492

End: 1927238

Strand: Reverse

Name: sufC [H]

Synonym: PHZ_c1719

Alternate gene names: 197105182

Gene position: 1927238-1926492 (Counterclockwise)

Preceding gene: 197105183

Following gene: 197105181

Centisome position: 48.23

GC content: 67.6

Gene sequence:

>747_bases
ATGTTGTCCGTGAAGAACCTGCACGCCGCGGTCGAGGACAAGGAGATCCTCAAGGGCCTCTCGCTCGAGGTGCCCGCCGG
CGAGGTGCACGCCATCATGGGGCCGAACGGGGCCGGCAAGTCGACGCTGTCCTACGTGCTGACGGGCCGCGAGGGCTACG
AGGTCACCGCCGGGTCGGCGACGCTGGACGGCGAGGACCTGCTGGCGCTGGAGCCCAACGAGCGCGCCGCCAAGGGCGTG
TTCCTGTCGTTCCAGTACCCGCTGGAGATCCCCGGCGTGCCGGCGCTGACCTTCATCCGCACGGCGCTGAACGCCCAGCG
CAAGGCCCGCGGCGAGGACGAGATCAGCGCGCCCGAGTTCCTGAAGCTGGCCAGGACCAAGGCCGCCGAGCTGAAGATCG
ACTTCGACATGATGAAGCGAGCGCTCAACGTCGGCTTCTCCGGTGGTGAGAAGAAGCGGATGGAAATCCTTCAAATGGCG
ATGCTTTCGCCGCGTTTCCTCATCCTGGACGAGACCGACTCCGGCCTCGACATCGACGCACTGCGCATCGTCGCCGACGG
GGTGAACGCGATGCGCGGCCCGGACCGTGCGATGCTGGTGATCACCCACTACCAGCGCCTCCTGGACTACATCAAACCCG
ACCGCGTGCACGTGCTCTCGGCCGGCCGGATCGTCGCCTCGGGCGGCCCTGAGCTGGCGCTGGAGCTGGAGCGCGAGGGC
TACGACAAGTACGCGAGGGCCGCTTGA

Upstream 100 bases:

>100_bases
TGAACGGCTTCGTCAGGGACGTGCTGCAGGAGCTCCCGATGGAGTTCGCCGTCGAGGCCCAGAAGCTGGTGGCCATTTCG
CTGGAAGGAAGTGTCGGCTG

Downstream 100 bases:

>100_bases
GCGTCGCCCTCGCCATACGCGCCCGCGACGCCTCGGCGCTTCCCGGGAAGCGCGACGAGGACTGGCGCTGGACCGACCTG
CGCGGCCTGATCCGCCAGGT

Product: ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MLSVKNLHAAVEDKEILKGLSLEVPAGEVHAIMGPNGAGKSTLSYVLTGREGYEVTAGSATLDGEDLLALEPNERAAKGV
FLSFQYPLEIPGVPALTFIRTALNAQRKARGEDEISAPEFLKLARTKAAELKIDFDMMKRALNVGFSGGEKKRMEILQMA
MLSPRFLILDETDSGLDIDALRIVADGVNAMRGPDRAMLVITHYQRLLDYIKPDRVHVLSAGRIVASGGPELALELEREG
YDKYARAA

Sequences:

>Translated_248_residues
MLSVKNLHAAVEDKEILKGLSLEVPAGEVHAIMGPNGAGKSTLSYVLTGREGYEVTAGSATLDGEDLLALEPNERAAKGV
FLSFQYPLEIPGVPALTFIRTALNAQRKARGEDEISAPEFLKLARTKAAELKIDFDMMKRALNVGFSGGEKKRMEILQMA
MLSPRFLILDETDSGLDIDALRIVADGVNAMRGPDRAMLVITHYQRLLDYIKPDRVHVLSAGRIVASGGPELALELEREG
YDKYARAA
>Mature_248_residues
MLSVKNLHAAVEDKEILKGLSLEVPAGEVHAIMGPNGAGKSTLSYVLTGREGYEVTAGSATLDGEDLLALEPNERAAKGV
FLSFQYPLEIPGVPALTFIRTALNAQRKARGEDEISAPEFLKLARTKAAELKIDFDMMKRALNVGFSGGEKKRMEILQMA
MLSPRFLILDETDSGLDIDALRIVADGVNAMRGPDRAMLVITHYQRLLDYIKPDRVHVLSAGRIVASGGPELALELEREG
YDKYARAA

Specific function: Has low ATPase activity. The SufBCD complex acts synergistically with SufE to stimulate the cysteine desulfurase activity of SufS. The SufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May f

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI171184400, Length=235, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI156105685, Length=231, Percent_Identity=30.3030303030303, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI73747915, Length=236, Percent_Identity=29.2372881355932, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI11967971, Length=225, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI148612844, Length=242, Percent_Identity=30.9917355371901, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI255708477, Length=242, Percent_Identity=30.9917355371901, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787972, Length=241, Percent_Identity=60.5809128630705, Blast_Score=303, Evalue=7e-84,
Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=28.2786885245902, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790525, Length=221, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=26.271186440678, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789864, Length=243, Percent_Identity=27.5720164609054, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=23.7068965517241, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787029, Length=241, Percent_Identity=26.5560165975104, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787370, Length=231, Percent_Identity=24.6753246753247, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789672, Length=236, Percent_Identity=25.8474576271186, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788165, Length=234, Percent_Identity=27.3504273504274, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786398, Length=224, Percent_Identity=26.3392857142857, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787792, Length=230, Percent_Identity=26.0869565217391, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=23.8095238095238, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787143, Length=227, Percent_Identity=28.6343612334802, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87081791, Length=232, Percent_Identity=25.8620689655172, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790467, Length=247, Percent_Identity=26.3157894736842, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=225, Percent_Identity=30.2222222222222, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17541710, Length=229, Percent_Identity=30.1310043668122, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=235, Percent_Identity=25.9574468085106, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71992290, Length=251, Percent_Identity=28.2868525896414, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=233, Percent_Identity=27.4678111587983, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=232, Percent_Identity=27.1551724137931, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=232, Percent_Identity=27.1551724137931, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=238, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=215, Percent_Identity=29.7674418604651, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=220, Percent_Identity=26.3636363636364, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=226, Percent_Identity=27.8761061946903, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17533971, Length=216, Percent_Identity=27.3148148148148, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=219, Percent_Identity=26.027397260274, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6319856, Length=250, Percent_Identity=27.2, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21357907, Length=233, Percent_Identity=29.6137339055794, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641565, Length=216, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85816269, Length=236, Percent_Identity=28.3898305084746, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580553, Length=236, Percent_Identity=28.3898305084746, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85724864, Length=236, Percent_Identity=28.3898305084746, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580555, Length=236, Percent_Identity=28.3898305084746, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17136662, Length=234, Percent_Identity=28.6324786324786, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85726357, Length=220, Percent_Identity=25.9090909090909, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI281363262, Length=230, Percent_Identity=29.5652173913043, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26995; Mature: 26995

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVKNLHAAVEDKEILKGLSLEVPAGEVHAIMGPNGAGKSTLSYVLTGREGYEVTAGSA
CCCCCHHHHHCCHHHHHCCCCEECCCCCEEEEECCCCCCCCEEEEEEECCCCCEEECCCE
TLDGEDLLALEPNERAAKGVFLSFQYPLEIPGVPALTFIRTALNAQRKARGEDEISAPEF
EECCCCEEEECCCCHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
LKLARTKAAELKIDFDMMKRALNVGFSGGEKKRMEILQMAMLSPRFLILDETDSGLDIDA
HHHHHHHHHEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
LRIVADGVNAMRGPDRAMLVITHYQRLLDYIKPDRVHVLSAGRIVASGGPELALELEREG
HHHHHHCHHHHCCCCCEEEEHHHHHHHHHHCCCCEEEEEECCEEEECCCCEEEEEEECCC
YDKYARAA
CCHHHCCC
>Mature Secondary Structure
MLSVKNLHAAVEDKEILKGLSLEVPAGEVHAIMGPNGAGKSTLSYVLTGREGYEVTAGSA
CCCCCHHHHHCCHHHHHCCCCEECCCCCEEEEECCCCCCCCEEEEEEECCCCCEEECCCE
TLDGEDLLALEPNERAAKGVFLSFQYPLEIPGVPALTFIRTALNAQRKARGEDEISAPEF
EECCCCEEEECCCCHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
LKLARTKAAELKIDFDMMKRALNVGFSGGEKKRMEILQMAMLSPRFLILDETDSGLDIDA
HHHHHHHHHEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
LRIVADGVNAMRGPDRAMLVITHYQRLLDYIKPDRVHVLSAGRIVASGGPELALELEREG
HHHHHHCHHHHCCCCCEEEEHHHHHHHHHHCCCCEEEEEECCEEEECCCCEEEEEEECCC
YDKYARAA
CCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]