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The map label for this gene is sufD [H]

Identifier: 197105181

GI number: 197105181

Start: 1925467

End: 1926495

Strand: Reverse

Name: sufD [H]

Synonym: PHZ_c1718

Alternate gene names: 197105181

Gene position: 1926495-1925467 (Counterclockwise)

Preceding gene: 197105182

Following gene: 197105180

Centisome position: 48.21

GC content: 74.15

Gene sequence:

>1029_bases
TTGAGCGTCGCCCTCGCCATACGCGCCCGCGACGCCTCGGCGCTTCCCGGGAAGCGCGACGAGGACTGGCGCTGGACCGA
CCTGCGCGGCCTGATCCGCCAGGTGCCCGATCCGTCGGCACCCTACGCCGGGGAGCCGCCTCCGGGCCCGTTCGACGCGA
TCGAGGCGGATGCGGTCCACATCCTGGCCAACGGCGGCCGGGCCGAGATCGACGTGCCGGCCGGCCAGCTCCGGACCGTG
CGGCTGCGGATCGCCGCCCAGGGCGCCGGCGCCCACGCCTCCCAGGTGGAGGTGCGGGTGGGCGAGGGCGCGACCCTGCG
CCTGCTGGAGAGCCACGACAGCGACGACGCCTCGCTGGCCCACACCGCGTTCGACTTCCACCTCGCCGCCGGAGCCTCGG
TCGAGCGGATCGTCGTCGCGGACGACCACCCCGAGGCGGTCAACGTGACCCAGGCCGAGGTGCGGATCACGTCCGGCGGA
CAGTTCGCCCAGAACGTCTTCACGACCGGCGCCCGCCGCCAGCGCCTGGAGACCGGCGTGCATCACCCAGGGCAGAAAGC
GATCGTCCGCCTCGACGGCGTCTACCTTCTGGAGGGCAAGGCGCACGCCGACCTGACGACGATCGTCACCCATGCCGGCC
GCGACGGCCGCACCGAGCAGCTGACCAAGGGCGTCGTGCGCGACCAGGCGCGCGGCGTCTTCCAGGGCCGCATCGTGGTC
GCCGAGGGCGCCGACGGCACCGACGCGCGCATGGGCCACCACGCGCTCATCGTCTCGGACCGGGCCGAGGTGGACGCCAA
GCCCGAGCTCGAGATCTACGCCGACGACGTCTCCTGCGCCCACGGCAATACGGTAGGGGCCCTGGACGAGGACGCGCTGT
TCTACGCCCGCCAGCGGGGCATCCCCGAGGCGGAGGCCCGGGCCATGCTGACGGAGGCCTTTGTGGGCGAGGTGGTCGAC
CGGGTGGCGTTTGCGCCCGCCCGCGATGTCGCCGCCGCGTGGGTCGCCGCGCGTCTGAGGGGCGCCTGA

Upstream 100 bases:

>100_bases
GCGTGCACGTGCTCTCGGCCGGCCGGATCGTCGCCTCGGGCGGCCCTGAGCTGGCGCTGGAGCTGGAGCGCGAGGGCTAC
GACAAGTACGCGAGGGCCGC

Downstream 100 bases:

>100_bases
TGGCCTTCGACGCCGAACAGGTCCGCGCCGAGTTCCCGATCCTGCAGCGGCAGGTGCATGGCAAGCCGCTGGTCTATCTC
GATAGCGCCGCCTCGGCCCA

Product: ABC-type transport system involved in Fe-S cluster assembly, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSVALAIRARDASALPGKRDEDWRWTDLRGLIRQVPDPSAPYAGEPPPGPFDAIEADAVHILANGGRAEIDVPAGQLRTV
RLRIAAQGAGAHASQVEVRVGEGATLRLLESHDSDDASLAHTAFDFHLAAGASVERIVVADDHPEAVNVTQAEVRITSGG
QFAQNVFTTGARRQRLETGVHHPGQKAIVRLDGVYLLEGKAHADLTTIVTHAGRDGRTEQLTKGVVRDQARGVFQGRIVV
AEGADGTDARMGHHALIVSDRAEVDAKPELEIYADDVSCAHGNTVGALDEDALFYARQRGIPEAEARAMLTEAFVGEVVD
RVAFAPARDVAAAWVAARLRGA

Sequences:

>Translated_342_residues
MSVALAIRARDASALPGKRDEDWRWTDLRGLIRQVPDPSAPYAGEPPPGPFDAIEADAVHILANGGRAEIDVPAGQLRTV
RLRIAAQGAGAHASQVEVRVGEGATLRLLESHDSDDASLAHTAFDFHLAAGASVERIVVADDHPEAVNVTQAEVRITSGG
QFAQNVFTTGARRQRLETGVHHPGQKAIVRLDGVYLLEGKAHADLTTIVTHAGRDGRTEQLTKGVVRDQARGVFQGRIVV
AEGADGTDARMGHHALIVSDRAEVDAKPELEIYADDVSCAHGNTVGALDEDALFYARQRGIPEAEARAMLTEAFVGEVVD
RVAFAPARDVAAAWVAARLRGA
>Mature_341_residues
SVALAIRARDASALPGKRDEDWRWTDLRGLIRQVPDPSAPYAGEPPPGPFDAIEADAVHILANGGRAEIDVPAGQLRTVR
LRIAAQGAGAHASQVEVRVGEGATLRLLESHDSDDASLAHTAFDFHLAAGASVERIVVADDHPEAVNVTQAEVRITSGGQ
FAQNVFTTGARRQRLETGVHHPGQKAIVRLDGVYLLEGKAHADLTTIVTHAGRDGRTEQLTKGVVRDQARGVFQGRIVVA
EGADGTDARMGHHALIVSDRAEVDAKPELEIYADDVSCAHGNTVGALDEDALFYARQRGIPEAEARAMLTEAFVGEVVDR
VAFAPARDVAAAWVAARLRGA

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=382, Percent_Identity=27.4869109947644, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 36384; Mature: 36253

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVALAIRARDASALPGKRDEDWRWTDLRGLIRQVPDPSAPYAGEPPPGPFDAIEADAVH
CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
ILANGGRAEIDVPAGQLRTVRLRIAAQGAGAHASQVEVRVGEGATLRLLESHDSDDASLA
EEECCCEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHH
HTAFDFHLAAGASVERIVVADDHPEAVNVTQAEVRITSGGQFAQNVFTTGARRQRLETGV
HHEEEEEEECCCCEEEEEEECCCCCEECEEEEEEEEECCCHHHHHHHHCCHHHHHHHHCC
HHPGQKAIVRLDGVYLLEGKAHADLTTIVTHAGRDGRTEQLTKGVVRDQARGVFQGRIVV
CCCCCCEEEEECCEEEECCCCCCCCEEHEEECCCCCCHHHHHHHHHHHHHCCEEECEEEE
AEGADGTDARMGHHALIVSDRAEVDAKPELEIYADDVSCAHGNTVGALDEDALFYARQRG
EECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHCC
IPEAEARAMLTEAFVGEVVDRVAFAPARDVAAAWVAARLRGA
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVALAIRARDASALPGKRDEDWRWTDLRGLIRQVPDPSAPYAGEPPPGPFDAIEADAVH
CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
ILANGGRAEIDVPAGQLRTVRLRIAAQGAGAHASQVEVRVGEGATLRLLESHDSDDASLA
EEECCCEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHH
HTAFDFHLAAGASVERIVVADDHPEAVNVTQAEVRITSGGQFAQNVFTTGARRQRLETGV
HHEEEEEEECCCCEEEEEEECCCCCEECEEEEEEEEECCCHHHHHHHHCCHHHHHHHHCC
HHPGQKAIVRLDGVYLLEGKAHADLTTIVTHAGRDGRTEQLTKGVVRDQARGVFQGRIVV
CCCCCCEEEEECCEEEECCCCCCCCEEHEEECCCCCCHHHHHHHHHHHHHCCEEECEEEE
AEGADGTDARMGHHALIVSDRAEVDAKPELEIYADDVSCAHGNTVGALDEDALFYARQRG
EECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCEECCCCCCCCCCCCHHHHHHHHCC
IPEAEARAMLTEAFVGEVVDRVAFAPARDVAAAWVAARLRGA
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]