Click here to switch to the map view.

The map label for this gene is sun [H]

Identifier: 197104882

GI number: 197104882

Start: 1604641

End: 1605918

Strand: Direct

Name: sun [H]

Synonym: PHZ_c1416

Alternate gene names: 197104882

Gene position: 1604641-1605918 (Clockwise)

Preceding gene: 197104881

Following gene: 197104883

Centisome position: 40.15

GC content: 75.27

Gene sequence:

>1278_bases
ATGCGCGACGGCGGACGGCTGGCGGCGGCCATTGAAGTTCTGACGGAGATCGAGGCTCGCCACCGCCCCGTCCGCCTGGC
GCTGAAGGCCTGGGGCGAGGCCGCCCGCTATGCGGGGGCCAAGGACCGCGCCTTCGTCTCGGGCCTGGTGCTGGACGTCC
TGCGTCGGCGGCGCTCGCTGGCCTGGCGCATGGGCGAGGAGGGGCCGCGGGCGGCGGCCCTGGGCGCCTTGCGCTTCCTG
TGGGACTGGCCCCTGGAGCGGATCGCCGAGGCGGCCGCCGAGGACCCCCATGGTCCGGGCCCGCTGAGCGACGCCGAGCG
GGCGGCGCTCGAGACGCCGCGGGACCTGGCGGACGCCCCGCCCGCGGTGCGGGGCGACTATCCGGACTGGCTCGACGCCG
GCTTCGCGCGCGCCTTCGGCGAGGCGCGGGCCGAGGAGGGGGCCGCGCTGGCCGAGCGGGCGCCGGTCGACCTGCGGGTC
AACACGCTGAAGACCGATCCCGAGCGGGCGCTGAAGGCCCTCGCGTCGGTGGAGGCCAGGCCCACCGGCGTGCTGCCGAC
CGCGCTGCGCATCGCCGCGCCCGACCCGGCCGCGCGCGGCGGCGCCGTCGAGGCGATCCCGCAGTTCTCCAAGGGTTGGT
TCGAGGTGCAGGATCTCGGCTCGCAGATCGCGGCGTCTGCCGCCGGCGAGGTGAAGGGCGCCCAGGTGCTCGACCTCTGC
GCCGGCGGCGGCGGCAAGACCCTGGCGCTGGCGGCGGCCATGGGCAACACCGGCCAGATCTACGCCTACGACTCCGACGC
CCGGCGCCTGACCGACACCGTCCGCCGAGGCGACCGCGCCGGCGCCCGCAACCTGCAGGTCCGCTCGCCTGTGAACCCCG
AGCCCCTGAAGGGTCTGGAGGGGCGGATGGACGTGGTGTTCGTCGACGCCCCCTGCACCGGGACGGGCTCGTGGCGACGC
CATCCCGACACCAAGTGGCGCCTGACGCCCGAGGCGCTGGCCCGCCGGCAGGCCGAACAGGACCAGGTGCTGGACGACGC
CGCACGCTTCGTGAAGGCCGGCGGCCGGATCGTCTACGTCACCTGCTCGGTGCTGCCGGAGGAGGACGAGGACCGGGTCG
AGGCCTTCCTGCAGCGCCATTCCGGGTTCGCCCGCCGGGCGGCCACCGACCAGGCGAACCTGGCTGACTACCTCACGCCT
GCCGGCGATCTGCGCCTTTCTCCCCGCACCTCCGGCACCGACGGCTTTTTCGTCGCGGTGCTGGAGAAAGCCCGCTAA

Upstream 100 bases:

>100_bases
TCATCCGCATCACCAACGCCGGCCTTCGCGAGAGCCACGTCCACGACGTGATGATCACCCGCGAGGCGCCGAACTACCCC
AGCGCCGTCTAGGCCGCCTC

Downstream 100 bases:

>100_bases
CGGAGCCCCATGACCGACACCGCCGACCACGAGCACGTCCTGATCGTCGACTTCGGGAGTCAGGTGACCCAGCTCATCGC
CCGGCGCCTGCGGGAGAGCG

Product: tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MRDGGRLAAAIEVLTEIEARHRPVRLALKAWGEAARYAGAKDRAFVSGLVLDVLRRRRSLAWRMGEEGPRAAALGALRFL
WDWPLERIAEAAAEDPHGPGPLSDAERAALETPRDLADAPPAVRGDYPDWLDAGFARAFGEARAEEGAALAERAPVDLRV
NTLKTDPERALKALASVEARPTGVLPTALRIAAPDPAARGGAVEAIPQFSKGWFEVQDLGSQIAASAAGEVKGAQVLDLC
AGGGGKTLALAAAMGNTGQIYAYDSDARRLTDTVRRGDRAGARNLQVRSPVNPEPLKGLEGRMDVVFVDAPCTGTGSWRR
HPDTKWRLTPEALARRQAEQDQVLDDAARFVKAGGRIVYVTCSVLPEEDEDRVEAFLQRHSGFARRAATDQANLADYLTP
AGDLRLSPRTSGTDGFFVAVLEKAR

Sequences:

>Translated_425_residues
MRDGGRLAAAIEVLTEIEARHRPVRLALKAWGEAARYAGAKDRAFVSGLVLDVLRRRRSLAWRMGEEGPRAAALGALRFL
WDWPLERIAEAAAEDPHGPGPLSDAERAALETPRDLADAPPAVRGDYPDWLDAGFARAFGEARAEEGAALAERAPVDLRV
NTLKTDPERALKALASVEARPTGVLPTALRIAAPDPAARGGAVEAIPQFSKGWFEVQDLGSQIAASAAGEVKGAQVLDLC
AGGGGKTLALAAAMGNTGQIYAYDSDARRLTDTVRRGDRAGARNLQVRSPVNPEPLKGLEGRMDVVFVDAPCTGTGSWRR
HPDTKWRLTPEALARRQAEQDQVLDDAARFVKAGGRIVYVTCSVLPEEDEDRVEAFLQRHSGFARRAATDQANLADYLTP
AGDLRLSPRTSGTDGFFVAVLEKAR
>Mature_425_residues
MRDGGRLAAAIEVLTEIEARHRPVRLALKAWGEAARYAGAKDRAFVSGLVLDVLRRRRSLAWRMGEEGPRAAALGALRFL
WDWPLERIAEAAAEDPHGPGPLSDAERAALETPRDLADAPPAVRGDYPDWLDAGFARAFGEARAEEGAALAERAPVDLRV
NTLKTDPERALKALASVEARPTGVLPTALRIAAPDPAARGGAVEAIPQFSKGWFEVQDLGSQIAASAAGEVKGAQVLDLC
AGGGGKTLALAAAMGNTGQIYAYDSDARRLTDTVRRGDRAGARNLQVRSPVNPEPLKGLEGRMDVVFVDAPCTGTGSWRR
HPDTKWRLTPEALARRQAEQDQVLDDAARFVKAGGRIVYVTCSVLPEEDEDRVEAFLQRHSGFARRAATDQANLADYLTP
AGDLRLSPRTSGTDGFFVAVLEKAR

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=283, Percent_Identity=30.0353356890459, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI76150623, Length=283, Percent_Identity=30.0353356890459, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI23199998, Length=230, Percent_Identity=32.1739130434783, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI8922322, Length=231, Percent_Identity=32.034632034632, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI270288816, Length=230, Percent_Identity=32.1739130434783, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI270288818, Length=231, Percent_Identity=32.034632034632, Blast_Score=92, Evalue=1e-18,
Organism=Escherichia coli, GI2367212, Length=309, Percent_Identity=35.2750809061489, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI87081985, Length=236, Percent_Identity=30.9322033898305, Blast_Score=82, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17536757, Length=328, Percent_Identity=29.2682926829268, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71998419, Length=300, Percent_Identity=28, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI115534021, Length=254, Percent_Identity=28.740157480315, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324268, Length=313, Percent_Identity=29.3929712460064, Blast_Score=97, Evalue=4e-21,
Organism=Drosophila melanogaster, GI22024126, Length=238, Percent_Identity=30.672268907563, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21356579, Length=264, Percent_Identity=26.8939393939394, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 45676; Mature: 45676

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDGGRLAAAIEVLTEIEARHRPVRLALKAWGEAARYAGAKDRAFVSGLVLDVLRRRRSL
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AWRMGEEGPRAAALGALRFLWDWPLERIAEAAAEDPHGPGPLSDAERAALETPRDLADAP
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHCCC
PAVRGDYPDWLDAGFARAFGEARAEEGAALAERAPVDLRVNTLKTDPERALKALASVEAR
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
PTGVLPTALRIAAPDPAARGGAVEAIPQFSKGWFEVQDLGSQIAASAAGEVKGAQVLDLC
CCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AGGGGKTLALAAAMGNTGQIYAYDSDARRLTDTVRRGDRAGARNLQVRSPVNPEPLKGLE
CCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC
GRMDVVFVDAPCTGTGSWRRHPDTKWRLTPEALARRQAEQDQVLDDAARFVKAGGRIVYV
CCEEEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TCSVLPEEDEDRVEAFLQRHSGFARRAATDQANLADYLTPAGDLRLSPRTSGTDGFFVAV
EEEECCCCCHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCCCEEECCCCCCCCCEEEEE
LEKAR
EECCC
>Mature Secondary Structure
MRDGGRLAAAIEVLTEIEARHRPVRLALKAWGEAARYAGAKDRAFVSGLVLDVLRRRRSL
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AWRMGEEGPRAAALGALRFLWDWPLERIAEAAAEDPHGPGPLSDAERAALETPRDLADAP
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHCCC
PAVRGDYPDWLDAGFARAFGEARAEEGAALAERAPVDLRVNTLKTDPERALKALASVEAR
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
PTGVLPTALRIAAPDPAARGGAVEAIPQFSKGWFEVQDLGSQIAASAAGEVKGAQVLDLC
CCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AGGGGKTLALAAAMGNTGQIYAYDSDARRLTDTVRRGDRAGARNLQVRSPVNPEPLKGLE
CCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCC
GRMDVVFVDAPCTGTGSWRRHPDTKWRLTPEALARRQAEQDQVLDDAARFVKAGGRIVYV
CCEEEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TCSVLPEEDEDRVEAFLQRHSGFARRAATDQANLADYLTPAGDLRLSPRTSGTDGFFVAV
EEEECCCCCHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCCCEEECCCCCCCCCEEEEE
LEKAR
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]