| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is tgt [H]
Identifier: 197104870
GI number: 197104870
Start: 1587029
End: 1588144
Strand: Direct
Name: tgt [H]
Synonym: PHZ_c1404
Alternate gene names: 197104870
Gene position: 1587029-1588144 (Clockwise)
Preceding gene: 197104869
Following gene: 197104873
Centisome position: 39.71
GC content: 71.59
Gene sequence:
>1116_bases ATGGCCGCGTTCCCGTTCACCATCGCCGCCACGGACGGCAAGGCGCGCACCGGCGTGCTCTCCACGCCTCGCGGCGATAT CCGGACGCCGGCGTTCATGCCGGTGGGCACGGCGGGGACCGTCAAGGCGCTGACGGTGGAGCAGGTGGCCGCGACGGGCG CCGACATCCTGCTGGGCAACACCTATCACCTCATGCTGCGCCCGACGGCCGAGCGGGTCCGCAGGCTGGGCGGCCTGCAC AGGTTCATGCGCTGGGAGAAGCCGATCCTGACGGACAGCGGCGGCTTCCAGGTCATGTCGCTGTCGCAGATCTCGAAGGT CACCGAGGACAGCGTCACCTTCCAGAGCCACCTGGACGGCAGCCGGCACGTGCTGACGCCCGAGCGCTCGATCGAGATCC AGGCCGACCTGCTGGGCTCCGACATCGTCATGCAGCTGGACGAGCTGGTCGCCCTGCCGGCCGAGCGCGACCGGGCGGCC GAGGCCATGCGCCGGTCCGCGCGCTGGGGACAGCGGTGCAGGGACGCGTTCGGCGCGCGCGAGGCCCAGGCGCTGTTCGC CATCCAGCAGGGCGGCACGGACGAGGCGCTGCGCGCCGAGTCGGCCGAGCGGCTGCGCGAGATCGGCTTCGACGGCTACG CCATCGGCGGCCTGGCGGTGGGCGAGGGCCACGAGGCCATGTGCGAGGTGCTGGACTATGCGCCCGGCATGCTTCCCGCC GAGCGGCCGCGCTATCTGATGGGCGTCGGCAAGCCGATCGACATCGTCGAGGCGGTCTACCGCGGGGTGGACATGTTCGA CTGCGTCCTGCCCACCCGCTCGGGCCGCCACGGCCAGGCGTGGACCTGGGACGGGCCGCTGAACCTGAAGAACGCCCGCT TCGCCGAGGACGAGGAGCCGCTCGACCCCACCATCCCCGTCTCGGCCAGCCGCGACTATTCGAAGGCCTATCTGCACCAC CTGGTGAAGGCCGGCGAGATCCTGGGCCAGGTGCTGCTGTCCTGGCACAACGTGGCCTTCTTCCAGGCGCTGATGGGCGA GATGCGCGCGGCCATCGCCGAGAGGCGCATGGAGGCCTTCCGCCGCGACTTCGCCGCCCGCCAGAAGGCGCGCTGA
Upstream 100 bases:
>100_bases TCGCGGGGACCGACACCATGCGGGCGGCCTACCGCCACGCCATCGAGACCGGCTACCGCTTCTATTCCTACGGCGACAGC TCGCTGCTCTGGAGAGCCTG
Downstream 100 bases:
>100_bases GCCCCGCTAGGGCCGTCCCTGCGGGAGGTCCTCGGGACGCGTCGGATAGCGCGGCTGAAACCGCCGGTCCGGATCGGGCG GCGGCGTGCCGGCCTTCTCG
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MAAFPFTIAATDGKARTGVLSTPRGDIRTPAFMPVGTAGTVKALTVEQVAATGADILLGNTYHLMLRPTAERVRRLGGLH RFMRWEKPILTDSGGFQVMSLSQISKVTEDSVTFQSHLDGSRHVLTPERSIEIQADLLGSDIVMQLDELVALPAERDRAA EAMRRSARWGQRCRDAFGAREAQALFAIQQGGTDEALRAESAERLREIGFDGYAIGGLAVGEGHEAMCEVLDYAPGMLPA ERPRYLMGVGKPIDIVEAVYRGVDMFDCVLPTRSGRHGQAWTWDGPLNLKNARFAEDEEPLDPTIPVSASRDYSKAYLHH LVKAGEILGQVLLSWHNVAFFQALMGEMRAAIAERRMEAFRRDFAARQKAR
Sequences:
>Translated_371_residues MAAFPFTIAATDGKARTGVLSTPRGDIRTPAFMPVGTAGTVKALTVEQVAATGADILLGNTYHLMLRPTAERVRRLGGLH RFMRWEKPILTDSGGFQVMSLSQISKVTEDSVTFQSHLDGSRHVLTPERSIEIQADLLGSDIVMQLDELVALPAERDRAA EAMRRSARWGQRCRDAFGAREAQALFAIQQGGTDEALRAESAERLREIGFDGYAIGGLAVGEGHEAMCEVLDYAPGMLPA ERPRYLMGVGKPIDIVEAVYRGVDMFDCVLPTRSGRHGQAWTWDGPLNLKNARFAEDEEPLDPTIPVSASRDYSKAYLHH LVKAGEILGQVLLSWHNVAFFQALMGEMRAAIAERRMEAFRRDFAARQKAR >Mature_370_residues AAFPFTIAATDGKARTGVLSTPRGDIRTPAFMPVGTAGTVKALTVEQVAATGADILLGNTYHLMLRPTAERVRRLGGLHR FMRWEKPILTDSGGFQVMSLSQISKVTEDSVTFQSHLDGSRHVLTPERSIEIQADLLGSDIVMQLDELVALPAERDRAAE AMRRSARWGQRCRDAFGAREAQALFAIQQGGTDEALRAESAERLREIGFDGYAIGGLAVGEGHEAMCEVLDYAPGMLPAE RPRYLMGVGKPIDIVEAVYRGVDMFDCVLPTRSGRHGQAWTWDGPLNLKNARFAEDEEPLDPTIPVSASRDYSKAYLHHL VKAGEILGQVLLSWHNVAFFQALMGEMRAAIAERRMEAFRRDFAARQKAR
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=351, Percent_Identity=45.2991452991453, Blast_Score=305, Evalue=5e-83, Organism=Escherichia coli, GI1786607, Length=364, Percent_Identity=51.6483516483517, Blast_Score=370, Evalue=1e-104, Organism=Caenorhabditis elegans, GI17544680, Length=360, Percent_Identity=43.6111111111111, Blast_Score=284, Evalue=4e-77, Organism=Drosophila melanogaster, GI19920510, Length=355, Percent_Identity=45.9154929577465, Blast_Score=314, Evalue=5e-86,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 40880; Mature: 40749
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAFPFTIAATDGKARTGVLSTPRGDIRTPAFMPVGTAGTVKALTVEQVAATGADILLGN CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECC TYHLMLRPTAERVRRLGGLHRFMRWEKPILTDSGGFQVMSLSQISKVTEDSVTFQSHLDG EEEEEECCHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHCCC SRHVLTPERSIEIQADLLGSDIVMQLDELVALPAERDRAAEAMRRSARWGQRCRDAFGAR CCEEECCCCCEEEEHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCH EAQALFAIQQGGTDEALRAESAERLREIGFDGYAIGGLAVGEGHEAMCEVLDYAPGMLPA HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECCEEECCCHHHHHHHHHHCCCCCCC ERPRYLMGVGKPIDIVEAVYRGVDMFDCVLPTRSGRHGQAWTWDGPLNLKNARFAEDEEP CCCCCEEECCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC LDPTIPVSASRDYSKAYLHHLVKAGEILGQVLLSWHNVAFFQALMGEMRAAIAERRMEAF CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRDFAARQKAR HHHHHHHHCCC >Mature Secondary Structure AAFPFTIAATDGKARTGVLSTPRGDIRTPAFMPVGTAGTVKALTVEQVAATGADILLGN CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECC TYHLMLRPTAERVRRLGGLHRFMRWEKPILTDSGGFQVMSLSQISKVTEDSVTFQSHLDG EEEEEECCHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHCCC SRHVLTPERSIEIQADLLGSDIVMQLDELVALPAERDRAAEAMRRSARWGQRCRDAFGAR CCEEECCCCCEEEEHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCH EAQALFAIQQGGTDEALRAESAERLREIGFDGYAIGGLAVGEGHEAMCEVLDYAPGMLPA HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECCEEECCCHHHHHHHHHHCCCCCCC ERPRYLMGVGKPIDIVEAVYRGVDMFDCVLPTRSGRHGQAWTWDGPLNLKNARFAEDEEP CCCCCEEECCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC LDPTIPVSASRDYSKAYLHHLVKAGEILGQVLLSWHNVAFFQALMGEMRAAIAERRMEAF CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRDFAARQKAR HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11259647 [H]