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The map label for this gene is rfbE [H]

Identifier: 197103943

GI number: 197103943

Start: 497264

End: 498013

Strand: Reverse

Name: rfbE [H]

Synonym: PHZ_c0477

Alternate gene names: 197103943

Gene position: 498013-497264 (Counterclockwise)

Preceding gene: 197103944

Following gene: 197103942

Centisome position: 12.46

GC content: 70.13

Gene sequence:

>750_bases
ATGAGCCAGCCTCCCGTCTCGATCACCTGCACGGGGCTGACGATCCGCTTCCCCGTCTACGGCGTCGACGCCAAGTCGCT
GAAGAAGTCGCTGGCCCGGGTGGCGGTCGGCGGCAAGCTCGGCCGCCACTTCGGCTCGACCGACGTCACCGCCCTGCAGG
ACCTGAACCTCGAGCTGAAGGCGGGCGACCGCCTGGGCCTGATCGGCCACAACGGCTCGGGCAAGACCACCCTGCTGCGG
GCGCTCTCGGGCGCCTACGAGCCCGACGAGGGCACCATCGACGTCCACGGCCGCATCGCCGCCCTGCTGGACCTGTCGCT
GGGCATCGACCTGTCGGCCACCGGCTACGACAACATCCGGCTGCGCGGCCGGATCGCCGGCCTCTCCGCCAAGGAGATCG
AGGCGCGGCTGCCCGAGATCGCCGAGTTCACGGGGCTCGGGCCCTTCCTCGCCATGCCGGTGAAGACCTATTCGGCGGGC
ATGCAGGCTCGTCTCGCCTTCGCCACCGCCACCGCCGTCGAGTGCGACGTGCTGCTGATGGACGAGTGGATCGCCGTCGG
CGACGCCGACTTCCAGAAGCTGGCGCACAAGCGCCTGCTGGGCCTGGTCGAGCGCGCGGGGATCCTGGTCCTGGCGACCC
ACGACGTCGACCTCCTGCGGCTCTACTGCAACAAAGTCATGCGGCTCGAGGGCGGCGTCGCCTCCGAGGTCACCGACATC
CGCAAGCTGGACGAGCTTCTGGCCGCCTGA

Upstream 100 bases:

>100_bases
CGCCGACCACCTACGTGGTCCTGGTGGCCATGGCGGCGGGCGGCTGGATCCTGACCTTCGCCCTCTTCGCCCGCACCCGC
CGCCGGATCGTGCACTACCT

Downstream 100 bases:

>100_bases
CGGTCGGCCTGTTAGGCAGGGCCCAGGAAGTCGGGCGTGGACGTCATCTTCACCATCGTGTCGCGGAACTACGCGGCCCA
GGCGGCGAGCCTGATGCAGA

Product: ABC transporter, ATP-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSQPPVSITCTGLTIRFPVYGVDAKSLKKSLARVAVGGKLGRHFGSTDVTALQDLNLELKAGDRLGLIGHNGSGKTTLLR
ALSGAYEPDEGTIDVHGRIAALLDLSLGIDLSATGYDNIRLRGRIAGLSAKEIEARLPEIAEFTGLGPFLAMPVKTYSAG
MQARLAFATATAVECDVLLMDEWIAVGDADFQKLAHKRLLGLVERAGILVLATHDVDLLRLYCNKVMRLEGGVASEVTDI
RKLDELLAA

Sequences:

>Translated_249_residues
MSQPPVSITCTGLTIRFPVYGVDAKSLKKSLARVAVGGKLGRHFGSTDVTALQDLNLELKAGDRLGLIGHNGSGKTTLLR
ALSGAYEPDEGTIDVHGRIAALLDLSLGIDLSATGYDNIRLRGRIAGLSAKEIEARLPEIAEFTGLGPFLAMPVKTYSAG
MQARLAFATATAVECDVLLMDEWIAVGDADFQKLAHKRLLGLVERAGILVLATHDVDLLRLYCNKVMRLEGGVASEVTDI
RKLDELLAA
>Mature_248_residues
SQPPVSITCTGLTIRFPVYGVDAKSLKKSLARVAVGGKLGRHFGSTDVTALQDLNLELKAGDRLGLIGHNGSGKTTLLRA
LSGAYEPDEGTIDVHGRIAALLDLSLGIDLSATGYDNIRLRGRIAGLSAKEIEARLPEIAEFTGLGPFLAMPVKTYSAGM
QARLAFATATAVECDVLLMDEWIAVGDADFQKLAHKRLLGLVERAGILVLATHDVDLLRLYCNKVMRLEGGVASEVTDIR
KLDELLAA

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbD [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI48995001, Length=200, Percent_Identity=29, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788540, Length=191, Percent_Identity=29.3193717277487, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786398, Length=206, Percent_Identity=27.1844660194175, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994943, Length=159, Percent_Identity=32.0754716981132, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=29.5238095238095, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081782, Length=154, Percent_Identity=29.8701298701299, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787089, Length=208, Percent_Identity=28.8461538461538, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081709, Length=185, Percent_Identity=28.6486486486486, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787370, Length=172, Percent_Identity=29.6511627906977, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=190, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007184, Length=182, Percent_Identity=25.8241758241758, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221500365, Length=182, Percent_Identity=25.8241758241758, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26551; Mature: 26420

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPPVSITCTGLTIRFPVYGVDAKSLKKSLARVAVGGKLGRHFGSTDVTALQDLNLELK
CCCCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHCCEEEE
AGDRLGLIGHNGSGKTTLLRALSGAYEPDEGTIDVHGRIAALLDLSLGIDLSATGYDNIR
CCCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEECHHEEEEEEHHCCCEEECCCCCCEE
LRGRIAGLSAKEIEARLPEIAEFTGLGPFLAMPVKTYSAGMQARLAFATATAVECDVLLM
EEEEEECCCHHHHHHHCCHHHHHCCCCHHHHCCHHHHHCCCCEEEEEEEHHHHEEEEEEE
DEWIAVGDADFQKLAHKRLLGLVERAGILVLATHDVDLLRLYCNKVMRLEGGVASEVTDI
ECEEECCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHH
RKLDELLAA
HHHHHHHCC
>Mature Secondary Structure 
SQPPVSITCTGLTIRFPVYGVDAKSLKKSLARVAVGGKLGRHFGSTDVTALQDLNLELK
CCCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHCCEEEE
AGDRLGLIGHNGSGKTTLLRALSGAYEPDEGTIDVHGRIAALLDLSLGIDLSATGYDNIR
CCCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEECHHEEEEEEHHCCCEEECCCCCCEE
LRGRIAGLSAKEIEARLPEIAEFTGLGPFLAMPVKTYSAGMQARLAFATATAVECDVLLM
EEEEEECCCHHHHHHHCCHHHHHCCCCHHHHCCHHHHHCCCCEEEEEEEHHHHEEEEEEE
DEWIAVGDADFQKLAHKRLLGLVERAGILVLATHDVDLLRLYCNKVMRLEGGVASEVTDI
ECEEECCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHH
RKLDELLAA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]