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The map label for this gene is rfbD [H]

Identifier: 197103944

GI number: 197103944

Start: 498010

End: 498846

Strand: Reverse

Name: rfbD [H]

Synonym: PHZ_c0478

Alternate gene names: 197103944

Gene position: 498846-498010 (Counterclockwise)

Preceding gene: 197103947

Following gene: 197103943

Centisome position: 12.48

GC content: 66.43

Gene sequence:

>837_bases
ATGCAGACGGCTGCCCACATGCTGCGGACCGGCCAGCGCGGCGGCCTGTTCCAGCTCCAGATGGCGTTCCGCGACCTCAA
GGGCTCGGGCCAGCGCCTGGGCCTGGCCTGGTCGCTCGCCTGGCACGACATCGTCTCGCGCTACCGCGGGTCGATCCTCG
GCCCCTTCTGGATCACGCTCTCGATGGGCCTGATGGTCCTCGGGATCGGCTTCCTCTACGCCAATCTCTTCAAGATCCCG
ATCAGCGAGTTCCTGCCCTTCGTGGCGCTCGGCATCGTCTTCTTCGGGGCCATGGCCGGCATCATCAACGAGGGCTGCGA
GACCTTCGTCCAGGCCAAGGGCATGCTCTCGCAGACCAGCCTGCCGATGTTCACCTTCGTCTGGCGCACGGTCCTGCGGA
ACCTGATCAGCCTGGCGCACCACCTGGTGATCGTCGTCGCGGTCCTGACCTATTACGACTACTGGGGCGTGGCGAAGCCG
CTCGTGGCCCTGCTCGGCGTCCTGCTGATGGTGCTGAACGTCAGCTGGATCAGCATGCTGGCGGGGATCGCCTCGGCCCG
CTTCCGCGACATCCCGCAGATCGTCGTCTCGATCATGCAGTTCGCGATCTTCATGACGCCGGTGTTCTGGACGCCGAACC
GCTTCTCGAGCGAGCACATGGCGGTGCTGCACTTCAACCCCTTCTTCCACCTGCTCGACGCGATCCGCGCGCCGCTGCTC
GGCGACGCGGTCTCGCCGACCACCTACGTGGTCCTGGTGGCCATGGCGGCGGGCGGCTGGATCCTGACCTTCGCCCTCTT
CGCCCGCACCCGCCGCCGGATCGTGCACTACCTATGA

Upstream 100 bases:

>100_bases
CTAGCACGGAAGCGCCCGGACTGGCAAAGCGGCGCCGGTCCCTCGCCTTGCGCCGCCCCCGGCCGCCTGATACCTCCGGC
GCCTTCGCGTCGGGAGTATC

Downstream 100 bases:

>100_bases
GCCAGCCTCCCGTCTCGATCACCTGCACGGGGCTGACGATCCGCTTCCCCGTCTACGGCGTCGACGCCAAGTCGCTGAAG
AAGTCGCTGGCCCGGGTGGC

Product: ATP-transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MQTAAHMLRTGQRGGLFQLQMAFRDLKGSGQRLGLAWSLAWHDIVSRYRGSILGPFWITLSMGLMVLGIGFLYANLFKIP
ISEFLPFVALGIVFFGAMAGIINEGCETFVQAKGMLSQTSLPMFTFVWRTVLRNLISLAHHLVIVVAVLTYYDYWGVAKP
LVALLGVLLMVLNVSWISMLAGIASARFRDIPQIVVSIMQFAIFMTPVFWTPNRFSSEHMAVLHFNPFFHLLDAIRAPLL
GDAVSPTTYVVLVAMAAGGWILTFALFARTRRRIVHYL

Sequences:

>Translated_278_residues
MQTAAHMLRTGQRGGLFQLQMAFRDLKGSGQRLGLAWSLAWHDIVSRYRGSILGPFWITLSMGLMVLGIGFLYANLFKIP
ISEFLPFVALGIVFFGAMAGIINEGCETFVQAKGMLSQTSLPMFTFVWRTVLRNLISLAHHLVIVVAVLTYYDYWGVAKP
LVALLGVLLMVLNVSWISMLAGIASARFRDIPQIVVSIMQFAIFMTPVFWTPNRFSSEHMAVLHFNPFFHLLDAIRAPLL
GDAVSPTTYVVLVAMAAGGWILTFALFARTRRRIVHYL
>Mature_278_residues
MQTAAHMLRTGQRGGLFQLQMAFRDLKGSGQRLGLAWSLAWHDIVSRYRGSILGPFWITLSMGLMVLGIGFLYANLFKIP
ISEFLPFVALGIVFFGAMAGIINEGCETFVQAKGMLSQTSLPMFTFVWRTVLRNLISLAHHLVIVVAVLTYYDYWGVAKP
LVALLGVLLMVLNVSWISMLAGIASARFRDIPQIVVSIMQFAIFMTPVFWTPNRFSSEHMAVLHFNPFFHLLDAIRAPLL
GDAVSPTTYVVLVAMAAGGWILTFALFARTRRRIVHYL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31075; Mature: 31075

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]