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The map label for this gene is ycfQ [C]

Identifier: 197103862

GI number: 197103862

Start: 398492

End: 399181

Strand: Reverse

Name: ycfQ [C]

Synonym: PHZ_c0396

Alternate gene names: 197103862

Gene position: 399181-398492 (Counterclockwise)

Preceding gene: 197103863

Following gene: 197103861

Centisome position: 9.99

GC content: 70.58

Gene sequence:

>690_bases
TTGCAGGCCCCCGCGTTACCCGCGAGAATGACGCGCGTCATTTTCGTAGAACGAGTCTGCACACCCTCCATGGCCCAGGT
CGCCTATCTTCCCGTCGGCAAGCGCGAGCAGACGAAGGTCCAGAACCGCCAGGCGATCCTCGACGCCGCGCGCGAGGTCT
TCGGCGAGATGGGCTACGAGGCCGCCACGGTGCGCGACATCATCCGCCGCACCGGCCTGGCCGCCGGCACCTTCTACAAC
TACTACCGCTCGAAGGAGGAGGTGTTCGCCGCCCTCGCCGACGACGGCGCGCGGCGCTTCGGCCCAATCCTGAAGAAGAT
CCGCGCCTCCAGCGACGACTTCGAGACCTTCGTGCGCCAGGCGATCGCCGCCTACTTCGGCTTCATGGCCGACGAGCACA
CCAGCTGGCTGGCCCGCCGTCCGCCCGGCGAGCCGCACCCCCACGTCCACGGCGAGACCCCCGAGATGGCCGCCGTCTTC
GCCGAGGTGCGGGACGCCCTGATGGAGGCCATCGCCGCCGGCCGGGGGCCCGTGGCCGACCCCGACTACATGGCGGCCGC
CTGCATCGCCATCGCCCGCGACGTCGGGGACAAGATGATCGAGCGCCGCCCCATCGACACCCAGGCCGCCACCGACTTCG
CCGTGGCCATGATCCTCAACGGCCTGCGCGGCCTGCCGGGGGCGAAGTAG

Upstream 100 bases:

>100_bases
GGGAAGGTCCGCGCCCCGGCCGCGGCCATGGAGTTCATCCGCCGGGTCGATCCGGAGTTCCGGCCGCAGGACCTGTAACC
ACCGTCACGCCACGGAACGC

Downstream 100 bases:

>100_bases
GAGATGCCGCCGGCCGGGGCCCAGCGCCTGATCGCCCGCACCCTCCTGTCCCTGCCCGCCCCCGTGCTGCGGCTGATGTC
GGGCGGCGGGGTCGTCTACA

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator Tetr Family

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MQAPALPARMTRVIFVERVCTPSMAQVAYLPVGKREQTKVQNRQAILDAAREVFGEMGYEAATVRDIIRRTGLAAGTFYN
YYRSKEEVFAALADDGARRFGPILKKIRASSDDFETFVRQAIAAYFGFMADEHTSWLARRPPGEPHPHVHGETPEMAAVF
AEVRDALMEAIAAGRGPVADPDYMAAACIAIARDVGDKMIERRPIDTQAATDFAVAMILNGLRGLPGAK

Sequences:

>Translated_229_residues
MQAPALPARMTRVIFVERVCTPSMAQVAYLPVGKREQTKVQNRQAILDAAREVFGEMGYEAATVRDIIRRTGLAAGTFYN
YYRSKEEVFAALADDGARRFGPILKKIRASSDDFETFVRQAIAAYFGFMADEHTSWLARRPPGEPHPHVHGETPEMAAVF
AEVRDALMEAIAAGRGPVADPDYMAAACIAIARDVGDKMIERRPIDTQAATDFAVAMILNGLRGLPGAK
>Mature_229_residues
MQAPALPARMTRVIFVERVCTPSMAQVAYLPVGKREQTKVQNRQAILDAAREVFGEMGYEAATVRDIIRRTGLAAGTFYN
YYRSKEEVFAALADDGARRFGPILKKIRASSDDFETFVRQAIAAYFGFMADEHTSWLARRPPGEPHPHVHGETPEMAAVF
AEVRDALMEAIAAGRGPVADPDYMAAACIAIARDVGDKMIERRPIDTQAATDFAVAMILNGLRGLPGAK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25118; Mature: 25118

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAPALPARMTRVIFVERVCTPSMAQVAYLPVGKREQTKVQNRQAILDAAREVFGEMGYE
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
AATVRDIIRRTGLAAGTFYNYYRSKEEVFAALADDGARRFGPILKKIRASSDDFETFVRQ
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AIAAYFGFMADEHTSWLARRPPGEPHPHVHGETPEMAAVFAEVRDALMEAIAAGRGPVAD
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDYMAAACIAIARDVGDKMIERRPIDTQAATDFAVAMILNGLRGLPGAK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQAPALPARMTRVIFVERVCTPSMAQVAYLPVGKREQTKVQNRQAILDAAREVFGEMGYE
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
AATVRDIIRRTGLAAGTFYNYYRSKEEVFAALADDGARRFGPILKKIRASSDDFETFVRQ
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AIAAYFGFMADEHTSWLARRPPGEPHPHVHGETPEMAAVFAEVRDALMEAIAAGRGPVAD
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDYMAAACIAIARDVGDKMIERRPIDTQAATDFAVAMILNGLRGLPGAK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA