| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is engB [H]
Identifier: 197103855
GI number: 197103855
Start: 392426
End: 393067
Strand: Reverse
Name: engB [H]
Synonym: PHZ_c0389
Alternate gene names: 197103855
Gene position: 393067-392426 (Counterclockwise)
Preceding gene: 197103856
Following gene: 197103854
Centisome position: 9.84
GC content: 70.56
Gene sequence:
>642_bases ATGACGGACGCGGTCTTCGACGCCGAAGAGCTGGAGGCCGCGCGCGTCCTGTTCGCGCACCCGGTGCGCTTCCTGATGGG GGCAGTCGCGATCTCGGGCCTGCCCGACCCCGACCTGCCCGAGGTGGCCTTCGCCGGCCGCTCGAACGTCGGCAAGAGCT CGCTGATCAACGCCGTCACCGGCCGCAAGGACCTGGCGCGCGCCTCCAACGAGCCGGGCCGCACCCGCGAGGTGAACTTC TTCGTCGCCGACGAGAAGCTGCGGCTGGTCGACCTGCCGGGCTACGGCTGGGCCCGGGCCTCCAAGTCGGTGGCCAGGAA GTTCCAGAACCTCGGCCGCGACTACCTGCGCGGCCGGCCGAACCTGAAGCGCGTCTACCTGCTGATCGACGCCCGCCACG GCCTGAAGGACGTCGACAAGGAGGCCCTGGACGCCCTCGACGTGGCCGCCGTCTCGTACCAGATCGTACTCACCAAGGCC GACAAGCTGCGGGCCGCCGAGGTGGAGAAGGTGGTCGCCGAGACGCTGCAGAAGGTCTCCAAGCGCCCCGCCGCCTTCCC GCGGGTGCTGGCCACCTCGTCCGAGAAGGGGACGGGCATTCCCGAGCTGCGCGCCGAGATCCTCGCGGCCTGTTTCGCGT AA
Upstream 100 bases:
>100_bases TGCTGCAGCAGTACGTGATCATGCGCCGCTTCAAGGTGGACAACCCGATCGACCAGATCATCCGGAAGCTCACCGGCAAG CCGAAGCCGGCGGGTTGAGC
Downstream 100 bases:
>100_bases CGGCCCTCTTCCCCGACGCGGCGTCAGCCCGCTAACTCGGGACGGAAACGCCCGGAGACCGCGATGCTGCAGACCGACAC CCGCACCGTCTACGACGAGG
Product: ribosome biogenesis GTP-binding protein YsxC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MTDAVFDAEELEAARVLFAHPVRFLMGAVAISGLPDPDLPEVAFAGRSNVGKSSLINAVTGRKDLARASNEPGRTREVNF FVADEKLRLVDLPGYGWARASKSVARKFQNLGRDYLRGRPNLKRVYLLIDARHGLKDVDKEALDALDVAAVSYQIVLTKA DKLRAAEVEKVVAETLQKVSKRPAAFPRVLATSSEKGTGIPELRAEILAACFA
Sequences:
>Translated_213_residues MTDAVFDAEELEAARVLFAHPVRFLMGAVAISGLPDPDLPEVAFAGRSNVGKSSLINAVTGRKDLARASNEPGRTREVNF FVADEKLRLVDLPGYGWARASKSVARKFQNLGRDYLRGRPNLKRVYLLIDARHGLKDVDKEALDALDVAAVSYQIVLTKA DKLRAAEVEKVVAETLQKVSKRPAAFPRVLATSSEKGTGIPELRAEILAACFA >Mature_212_residues TDAVFDAEELEAARVLFAHPVRFLMGAVAISGLPDPDLPEVAFAGRSNVGKSSLINAVTGRKDLARASNEPGRTREVNFF VADEKLRLVDLPGYGWARASKSVARKFQNLGRDYLRGRPNLKRVYLLIDARHGLKDVDKEALDALDVAAVSYQIVLTKAD KLRAAEVEKVVAETLQKVSKRPAAFPRVLATSSEKGTGIPELRAEILAACFA
Specific function: Necessary for normal cell division and for the maintenance of normal septation [H]
COG id: COG0218
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI56549685, Length=189, Percent_Identity=38.0952380952381, Blast_Score=114, Evalue=6e-26, Organism=Homo sapiens, GI56549687, Length=136, Percent_Identity=35.2941176470588, Blast_Score=79, Evalue=3e-15, Organism=Escherichia coli, GI145693205, Length=148, Percent_Identity=46.6216216216216, Blast_Score=123, Evalue=8e-30, Organism=Saccharomyces cerevisiae, GI6320543, Length=187, Percent_Identity=30.4812834224599, Blast_Score=82, Evalue=7e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019987 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 23201; Mature: 23070
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAVFDAEELEAARVLFAHPVRFLMGAVAISGLPDPDLPEVAFAGRSNVGKSSLINAVT CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHH GRKDLARASNEPGRTREVNFFVADEKLRLVDLPGYGWARASKSVARKFQNLGRDYLRGRP CHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHCCCC NLKRVYLLIDARHGLKDVDKEALDALDVAAVSYQIVLTKADKLRAAEVEKVVAETLQKVS CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHH KRPAAFPRVLATSSEKGTGIPELRAEILAACFA HCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure TDAVFDAEELEAARVLFAHPVRFLMGAVAISGLPDPDLPEVAFAGRSNVGKSSLINAVT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHH GRKDLARASNEPGRTREVNFFVADEKLRLVDLPGYGWARASKSVARKFQNLGRDYLRGRP CHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHCCCC NLKRVYLLIDARHGLKDVDKEALDALDVAAVSYQIVLTKADKLRAAEVEKVVAETLQKVS CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHH KRPAAFPRVLATSSEKGTGIPELRAEILAACFA HCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA