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The map label for this gene is ykfC [H]

Identifier: 197103825

GI number: 197103825

Start: 364329

End: 365165

Strand: Direct

Name: ykfC [H]

Synonym: PHZ_c0359

Alternate gene names: 197103825

Gene position: 364329-365165 (Clockwise)

Preceding gene: 197103824

Following gene: 197103827

Centisome position: 9.12

GC content: 73.36

Gene sequence:

>837_bases
ATGAACCTCGATCCTCGGGTGACGCCGATCCGCGACGGGATCGCCGCCCGCAGCCTGGAGGGGATCGTGGCGGCCGAGGT
CTATCTGGACCCGACGCCGATGACCTGCGCCCTGGCGGCGACGGGCGTCCACCGCGAGCCCAGCCTGGGCTCGGAGCAGG
TGGACCAGCTGCTGTTCGGCGAGCGCTTCGAGGTGCTGGAGGAGGAGGGCGCCTTCGCCCTCGGCCAGGCGACCCGGGAC
GGCTACGTGGGCTATGTGGCGGCCGCGGCCCTGGCCCCGCCGGCGCCGGCCCCGACCCACCGCGTGGCGGCGCTGCGCAC
CTATGCGTTCGAGGGGCCCAGCATCAAGAGCCGCGCGATGAGCCTGCTGTCGCTGAACAGCCTCGTCGCCGTGGAGGCGC
AGGAGGGCCGGCTCGCGAAGGTCGCCGGCTCGGGCTGGGTCACGGTGGAGCACCTGTCGCCCATCGGGGTGTTCGAGGAC
GATCCCGCCGCCGTGGCCGAGCGCTTCGTCGGCGCGCCCTACCTGTGGGGCGGGCGCGAGAGCCTGGGCGTGGACTGCTC
GGGCCTGGTGCAGCAGGCGCTGTTCGCCTGCGGCCGGGCCTGCCCGCGCGACGCCGACCAGCAGCAGGCCCTGGGCCGTG
AGATCGACCGCGCCGACTTCGGCCGCGGCGACCTTGTGTTCTGGAAGGGGCACGTGGCCATCGGCGTGGACGCCGGACGC
ATCGTGCACGCCAACGGCCATCACATGATGACGGTGGTGGAGCCGCTGGAGGCCGCCGTGGAACGCATAAAGGCCGCGGG
CTACGGCGAGCCCACGGCCTTCAGGCGGATCCTCTAA

Upstream 100 bases:

>100_bases
ACATCTTCGCCTGGAACCCTCGCGGGAAACCGGGCCAGCCCGCGGGCGCCGAGGTCCAGGCGATCCGCGGCCTCTACCGC
ATGATCCGGGAGCGATTCGC

Downstream 100 bases:

>100_bases
GAGGTCCGGACTACTTCTTGGCGGGCGCCGCTTCGGGAGCGGCGGGGGCGGCTTCGCCCTCGGCCGGGGCATCGGCGGGC
GCCGCGCCCTCGGCCGGGGC

Product: cell wall-associated hydrolase

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNLDPRVTPIRDGIAARSLEGIVAAEVYLDPTPMTCALAATGVHREPSLGSEQVDQLLFGERFEVLEEEGAFALGQATRD
GYVGYVAAAALAPPAPAPTHRVAALRTYAFEGPSIKSRAMSLLSLNSLVAVEAQEGRLAKVAGSGWVTVEHLSPIGVFED
DPAAVAERFVGAPYLWGGRESLGVDCSGLVQQALFACGRACPRDADQQQALGREIDRADFGRGDLVFWKGHVAIGVDAGR
IVHANGHHMMTVVEPLEAAVERIKAAGYGEPTAFRRIL

Sequences:

>Translated_278_residues
MNLDPRVTPIRDGIAARSLEGIVAAEVYLDPTPMTCALAATGVHREPSLGSEQVDQLLFGERFEVLEEEGAFALGQATRD
GYVGYVAAAALAPPAPAPTHRVAALRTYAFEGPSIKSRAMSLLSLNSLVAVEAQEGRLAKVAGSGWVTVEHLSPIGVFED
DPAAVAERFVGAPYLWGGRESLGVDCSGLVQQALFACGRACPRDADQQQALGREIDRADFGRGDLVFWKGHVAIGVDAGR
IVHANGHHMMTVVEPLEAAVERIKAAGYGEPTAFRRIL
>Mature_278_residues
MNLDPRVTPIRDGIAARSLEGIVAAEVYLDPTPMTCALAATGVHREPSLGSEQVDQLLFGERFEVLEEEGAFALGQATRD
GYVGYVAAAALAPPAPAPTHRVAALRTYAFEGPSIKSRAMSLLSLNSLVAVEAQEGRLAKVAGSGWVTVEHLSPIGVFED
DPAAVAERFVGAPYLWGGRESLGVDCSGLVQQALFACGRACPRDADQQQALGREIDRADFGRGDLVFWKGHVAIGVDAGR
IVHANGHHMMTVVEPLEAAVERIKAAGYGEPTAFRRIL

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 29526; Mature: 29526

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLDPRVTPIRDGIAARSLEGIVAAEVYLDPTPMTCALAATGVHREPSLGSEQVDQLLFG
CCCCCCCCHHHCCHHHHHHCCEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
ERFEVLEEEGAFALGQATRDGYVGYVAAAALAPPAPAPTHRVAALRTYAFEGPSIKSRAM
HHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
SLLSLNSLVAVEAQEGRLAKVAGSGWVTVEHLSPIGVFEDDPAAVAERFVGAPYLWGGRE
HHHHHCCEEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEECCCC
SLGVDCSGLVQQALFACGRACPRDADQQQALGREIDRADFGRGDLVFWKGHVAIGVDAGR
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECEEEEEECCCE
IVHANGHHMMTVVEPLEAAVERIKAAGYGEPTAFRRIL
EEEECCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHCC
>Mature Secondary Structure
MNLDPRVTPIRDGIAARSLEGIVAAEVYLDPTPMTCALAATGVHREPSLGSEQVDQLLFG
CCCCCCCCHHHCCHHHHHHCCEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
ERFEVLEEEGAFALGQATRDGYVGYVAAAALAPPAPAPTHRVAALRTYAFEGPSIKSRAM
HHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
SLLSLNSLVAVEAQEGRLAKVAGSGWVTVEHLSPIGVFEDDPAAVAERFVGAPYLWGGRE
HHHHHCCEEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEECCCC
SLGVDCSGLVQQALFACGRACPRDADQQQALGREIDRADFGRGDLVFWKGHVAIGVDAGR
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECEEEEEECCCE
IVHANGHHMMTVVEPLEAAVERIKAAGYGEPTAFRRIL
EEEECCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]