| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is acrR [C]
Identifier: 197103491
GI number: 197103491
Start: 22223
End: 22831
Strand: Direct
Name: acrR [C]
Synonym: PHZ_c0025
Alternate gene names: 197103491
Gene position: 22223-22831 (Clockwise)
Preceding gene: 197103490
Following gene: 197103497
Centisome position: 0.56
GC content: 72.25
Gene sequence:
>609_bases ATGGCGCGCGTCACGGGCCAGATCGACGTCGCGAAGAGCGAGGCCATCCTGGATGCAGCCCTCGACGTCTTCGTCGAGCG GGGCGTCTCGGCGGCGATGGAGGAGATCGCTCGCCGGGCGGGCGTGTCGAAGCAGACGATCTACAACCACTATGGCAGCA AGGCCGAGCTGGTGCAGGCGCTGACCGCCCGGCGGGTGCACGAGATGGTCGCCCCGCTGGAGACCGAGGAGGGAGTGGCC GATCCGCAGCAGGCCCTGGCCGGCTTCGCCCGGGTGCTGCTGGGCAAGGTGCTGAACGAGCGCTCCCGCGCCTTCCTACG GGTGGCGATGATGGGAGCCATCGAGGCGCCCGAGCTGGGCCGCGCCGTCTGGGAGGCGGGCCCGCGGACCAGCCGCCGCC GGCTGGCCGAGTTCCTCGACATGGAGACGAGGGCCGGCCGGATCGCCTGCCCCGATCCCCAGGAGGCGGCCGAATTCTTC GCCGGGATGGTGATCGGCTCGTACCAGACCGCCGCCCTGCTGGGCGTGGAACGGCCGCTGACCGAGGCGCTGGTGGACCG GGTGGCGACCGAGGCCGCCGCCCGCTTCATGAAGGCCTACGCCGCCTGA
Upstream 100 bases:
>100_bases TCGGCGTGCTGGCGATGGGCTGCTGGGTCGCCGCAGCCCTGGCGTTCTTCGCCCGGCCCGGGCGGCCGGGCGCGGCCCCG GCCAACACGGAGGCGCACTG
Downstream 100 bases:
>100_bases GGCGGTCTCAGCCCTCGGCCTCGTCTTCCGTGAAGCCCATGATGTGGAAGCCGGCGTCCACGTGGATGCATTCGCCGGTG GTGGACTTGCCGAGGTCGGA
Product: transcriptional regulator, TetR family
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcription Regulator Protein; Regulatory Protein TetR; TetR-Family Trancriptional Regulatory Protein; Regulatory Protein Tetr; Transcriptional Regulator Tetr Family; TetR-Type Transcriptional Regulator; TetR-Family Transcriptional Regulator; Transcriptional Regulator TetR/AcrR Family; Transcriptional Regulator Protein; Transcription Regulator Protein Tetr Family; TetR Family Regulatory Protein; Transcription Regulator Protein TetR Family; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MARVTGQIDVAKSEAILDAALDVFVERGVSAAMEEIARRAGVSKQTIYNHYGSKAELVQALTARRVHEMVAPLETEEGVA DPQQALAGFARVLLGKVLNERSRAFLRVAMMGAIEAPELGRAVWEAGPRTSRRRLAEFLDMETRAGRIACPDPQEAAEFF AGMVIGSYQTAALLGVERPLTEALVDRVATEAAARFMKAYAA
Sequences:
>Translated_202_residues MARVTGQIDVAKSEAILDAALDVFVERGVSAAMEEIARRAGVSKQTIYNHYGSKAELVQALTARRVHEMVAPLETEEGVA DPQQALAGFARVLLGKVLNERSRAFLRVAMMGAIEAPELGRAVWEAGPRTSRRRLAEFLDMETRAGRIACPDPQEAAEFF AGMVIGSYQTAALLGVERPLTEALVDRVATEAAARFMKAYAA >Mature_201_residues ARVTGQIDVAKSEAILDAALDVFVERGVSAAMEEIARRAGVSKQTIYNHYGSKAELVQALTARRVHEMVAPLETEEGVAD PQQALAGFARVLLGKVLNERSRAFLRVAMMGAIEAPELGRAVWEAGPRTSRRRLAEFLDMETRAGRIACPDPQEAAEFFA GMVIGSYQTAALLGVERPLTEALVDRVATEAAARFMKAYAA
Specific function: Potential Regulator Protein For The Acrab Genes. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21862; Mature: 21731
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARVTGQIDVAKSEAILDAALDVFVERGVSAAMEEIARRAGVSKQTIYNHYGSKAELVQA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH LTARRVHEMVAPLETEEGVADPQQALAGFARVLLGKVLNERSRAFLRVAMMGAIEAPELG HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH RAVWEAGPRTSRRRLAEFLDMETRAGRIACPDPQEAAEFFAGMVIGSYQTAALLGVERPL HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH TEALVDRVATEAAARFMKAYAA HHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ARVTGQIDVAKSEAILDAALDVFVERGVSAAMEEIARRAGVSKQTIYNHYGSKAELVQA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHH LTARRVHEMVAPLETEEGVADPQQALAGFARVLLGKVLNERSRAFLRVAMMGAIEAPELG HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH RAVWEAGPRTSRRRLAEFLDMETRAGRIACPDPQEAAEFFAGMVIGSYQTAALLGVERPL HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH TEALVDRVATEAAARFMKAYAA HHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA