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The map label for this gene is ykpA [H]

Identifier: 195979045

GI number: 195979045

Start: 2016005

End: 2017624

Strand: Direct

Name: ykpA [H]

Synonym: Sez_1957

Alternate gene names: 195979045

Gene position: 2016005-2017624 (Clockwise)

Preceding gene: 195979044

Following gene: 195979046

Centisome position: 99.6

GC content: 40.56

Gene sequence:

>1620_bases
TTGCTAACAGTTTCTGACGTATCACTGCGCTTTAGTGATCGAAAACTTTTTGACGACGTCAATATCAAATTTACAGCTGG
CAACACTTATGGCTTAATTGGTGCCAATGGTGCCGGAAAATCAACCTTCCTAAAAATTCTCGCAGGTGATATCGAACCAA
CAACAGGTCATATCTCTTTAGGACCAGATGAGCGTCTTTCTGTCCTTCGCCAAAATCATTTTGATTACGAAGAGGAACGT
GCCATTGATGTGGTTATCATGGGAAATGAACAGCTTTACAGTATCATGAAGGAAAAGGATGCTATTTACATGAAGCCTGA
TTTTTCTGAGGAAGATGGTGTTCGCGCTGCCGAATTAGAAGGAAGCTTTGCTGAGCTAGGCGGCTGGGAGGCTGAAAGTG
AGGCCTCTCAATTACTACAAAACCTAAATATCCCTGAGGAATTGCATTATCAAAGCATGAGCGAGCTCACCAATGGTGAT
AAGGTGAAGGTTCTCCTAGCTAAAGCACTTTTTGGCAAGCCTGATGTTTTGCTGCTAGACGAGCCAACCAACGGTCTTGA
TATTCAGTCTATTTCATGGTTAGAAGACTTCTTGATTGACTTTGAAAATACTGTTATTGTGGTGTCACATGACCGTCACT
TTTTGAACAAGGTATGTACTCACATGGCTGACCTTGATTTTGGAAAGATTAAGCTTTTTGTCGGTAACTACGATTTCTGG
AAGCAATCATCTGAATTAGCTGCACGCCTTCAGGCAGATCGTAACGCCAAGGCCGAAGAAAAAATCAAAGAGCTGCAAGA
ATTTGTGGCACGCTTTTCTGCCAATGCTTCTAAATCAAAACAAGCAACCTCTCGTAAGAAAATGCTAGACAAAATTGAGC
TAGAAGAGATTATTCCATCTAGTCGCAAATACCCATTCATCAATTTTAAAGCTGAGCGTGAGATGGGCAATGATTTTGTA
ACAGTTGAGAATTTGTCTGTAACCATCGATGGCGAAAAAATTCTAGACAATATTAGCTTCATTCTAAGGCCAGGTGATAA
GGCTGCCATTATCGGACAAAATGACATTCAAACAACAGCCCTTATGCGCGCTCTGGCTGATGACATTGACTATGAAGGAA
CTATCAAATGGGGAGTAACAACTAGTCGCTCTTATCTACCAAAGGACAACTCACGTGACTTTGCTAGCGATGAATCTATT
CTTGAATGGCTCCGCCAATTTGCATCAAAGGGTGAAGATGATGATACCTTCTTGCGTGGTTTCTTAGGACGTATGCTCTT
TTCTGGAGATGAGGTTAAAAAATCCGTTAACGTTCTCTCTGGTGGTGAGAAGGTGCGCGTGATGCTATCAAAGTTAATGC
TTTTAAAATCAAATGTTCTCCTTCTTGATGACCCAACCAATCACCTAGATTTGGAATCTATTTCAAGTCTCAATGACGGG
ATTAAAGATTTTAAAGAGTCTGTTATTTTTACCAGTCACGACCACGAGTTTATTCAAACCATTGCTAATCACATTGTTGT
TATTTCTAAAAATGGTGTGATTGACCGTATTGACGAAACCTATGATGAATTCCTTGAAAACAAAGACGTTCAAGCTAAGG
TAGCAGAGCTTTGGAAATAA

Upstream 100 bases:

>100_bases
GATGTGCTGCTGCCTATGTAAGCCCTAAGCCCTTTTCTGATTGAAAAAAGGGGCTTTTTTAGGTACAATGAGGATTAGAT
AAATAAAATGAGGTGACAAA

Downstream 100 bases:

>100_bases
GGAAGAAACAAAGAGCTTTGCTCAATATCATCATTAAAGTTATAGAGATGATCACTGATGACATCTGAGGGCTGGAAACT
ATTTCTAGCCCTTTTTTCAA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MLTVSDVSLRFSDRKLFDDVNIKFTAGNTYGLIGANGAGKSTFLKILAGDIEPTTGHISLGPDERLSVLRQNHFDYEEER
AIDVVIMGNEQLYSIMKEKDAIYMKPDFSEEDGVRAAELEGSFAELGGWEAESEASQLLQNLNIPEELHYQSMSELTNGD
KVKVLLAKALFGKPDVLLLDEPTNGLDIQSISWLEDFLIDFENTVIVVSHDRHFLNKVCTHMADLDFGKIKLFVGNYDFW
KQSSELAARLQADRNAKAEEKIKELQEFVARFSANASKSKQATSRKKMLDKIELEEIIPSSRKYPFINFKAEREMGNDFV
TVENLSVTIDGEKILDNISFILRPGDKAAIIGQNDIQTTALMRALADDIDYEGTIKWGVTTSRSYLPKDNSRDFASDESI
LEWLRQFASKGEDDDTFLRGFLGRMLFSGDEVKKSVNVLSGGEKVRVMLSKLMLLKSNVLLLDDPTNHLDLESISSLNDG
IKDFKESVIFTSHDHEFIQTIANHIVVISKNGVIDRIDETYDEFLENKDVQAKVAELWK

Sequences:

>Translated_539_residues
MLTVSDVSLRFSDRKLFDDVNIKFTAGNTYGLIGANGAGKSTFLKILAGDIEPTTGHISLGPDERLSVLRQNHFDYEEER
AIDVVIMGNEQLYSIMKEKDAIYMKPDFSEEDGVRAAELEGSFAELGGWEAESEASQLLQNLNIPEELHYQSMSELTNGD
KVKVLLAKALFGKPDVLLLDEPTNGLDIQSISWLEDFLIDFENTVIVVSHDRHFLNKVCTHMADLDFGKIKLFVGNYDFW
KQSSELAARLQADRNAKAEEKIKELQEFVARFSANASKSKQATSRKKMLDKIELEEIIPSSRKYPFINFKAEREMGNDFV
TVENLSVTIDGEKILDNISFILRPGDKAAIIGQNDIQTTALMRALADDIDYEGTIKWGVTTSRSYLPKDNSRDFASDESI
LEWLRQFASKGEDDDTFLRGFLGRMLFSGDEVKKSVNVLSGGEKVRVMLSKLMLLKSNVLLLDDPTNHLDLESISSLNDG
IKDFKESVIFTSHDHEFIQTIANHIVVISKNGVIDRIDETYDEFLENKDVQAKVAELWK
>Mature_539_residues
MLTVSDVSLRFSDRKLFDDVNIKFTAGNTYGLIGANGAGKSTFLKILAGDIEPTTGHISLGPDERLSVLRQNHFDYEEER
AIDVVIMGNEQLYSIMKEKDAIYMKPDFSEEDGVRAAELEGSFAELGGWEAESEASQLLQNLNIPEELHYQSMSELTNGD
KVKVLLAKALFGKPDVLLLDEPTNGLDIQSISWLEDFLIDFENTVIVVSHDRHFLNKVCTHMADLDFGKIKLFVGNYDFW
KQSSELAARLQADRNAKAEEKIKELQEFVARFSANASKSKQATSRKKMLDKIELEEIIPSSRKYPFINFKAEREMGNDFV
TVENLSVTIDGEKILDNISFILRPGDKAAIIGQNDIQTTALMRALADDIDYEGTIKWGVTTSRSYLPKDNSRDFASDESI
LEWLRQFASKGEDDDTFLRGFLGRMLFSGDEVKKSVNVLSGGEKVRVMLSKLMLLKSNVLLLDDPTNHLDLESISSLNDG
IKDFKESVIFTSHDHEFIQTIANHIVVISKNGVIDRIDETYDEFLENKDVQAKVAELWK

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=541, Percent_Identity=29.9445471349353, Blast_Score=219, Evalue=4e-57,
Organism=Homo sapiens, GI27881506, Length=543, Percent_Identity=28.7292817679558, Blast_Score=209, Evalue=4e-54,
Organism=Homo sapiens, GI10947137, Length=543, Percent_Identity=28.7292817679558, Blast_Score=209, Evalue=5e-54,
Organism=Homo sapiens, GI10947135, Length=552, Percent_Identity=26.0869565217391, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI69354671, Length=552, Percent_Identity=26.0869565217391, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI27262624, Length=161, Percent_Identity=30.4347826086957, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI27262626, Length=161, Percent_Identity=30.4347826086957, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI153792144, Length=305, Percent_Identity=26.2295081967213, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1787041, Length=533, Percent_Identity=46.9043151969981, Blast_Score=521, Evalue=1e-149,
Organism=Escherichia coli, GI1789751, Length=530, Percent_Identity=30, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI2367384, Length=543, Percent_Identity=30.0184162062615, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1787182, Length=528, Percent_Identity=28.5984848484849, Blast_Score=197, Evalue=2e-51,
Organism=Escherichia coli, GI1788450, Length=305, Percent_Identity=26.5573770491803, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=26.6094420600858, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788165, Length=198, Percent_Identity=24.2424242424242, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786319, Length=223, Percent_Identity=23.3183856502242, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786398, Length=223, Percent_Identity=24.2152466367713, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87081782, Length=210, Percent_Identity=28.0952380952381, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17553372, Length=543, Percent_Identity=28.3609576427256, Blast_Score=199, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI17555318, Length=522, Percent_Identity=28.1609195402299, Blast_Score=197, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI17559834, Length=529, Percent_Identity=25.5198487712665, Blast_Score=186, Evalue=4e-47,
Organism=Caenorhabditis elegans, GI115533608, Length=237, Percent_Identity=27.4261603375527, Blast_Score=72, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6320874, Length=528, Percent_Identity=31.8181818181818, Blast_Score=228, Evalue=1e-60,
Organism=Saccharomyces cerevisiae, GI6321121, Length=541, Percent_Identity=27.7264325323475, Blast_Score=185, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6325030, Length=238, Percent_Identity=31.0924369747899, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6324314, Length=250, Percent_Identity=27.6, Blast_Score=92, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6323278, Length=266, Percent_Identity=26.6917293233083, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24666836, Length=535, Percent_Identity=27.8504672897196, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI24642252, Length=544, Percent_Identity=27.5735294117647, Blast_Score=205, Evalue=6e-53,
Organism=Drosophila melanogaster, GI18859989, Length=544, Percent_Identity=27.5735294117647, Blast_Score=205, Evalue=6e-53,
Organism=Drosophila melanogaster, GI24641342, Length=524, Percent_Identity=26.7175572519084, Blast_Score=187, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60771; Mature: 60771

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTVSDVSLRFSDRKLFDDVNIKFTAGNTYGLIGANGAGKSTFLKILAGDIEPTTGHISL
CEEEECEEEEECCCHHCCCCEEEEECCCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEC
GPDERLSVLRQNHFDYEEERAIDVVIMGNEQLYSIMKEKDAIYMKPDFSEEDGVRAAELE
CCHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCEEEECC
GSFAELGGWEAESEASQLLQNLNIPEELHYQSMSELTNGDKVKVLLAKALFGKPDVLLLD
CCHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCEEEEE
EPTNGLDIQSISWLEDFLIDFENTVIVVSHDRHFLNKVCTHMADLDFGKIKLFVGNYDFW
CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHH
KQSSELAARLQADRNAKAEEKIKELQEFVARFSANASKSKQATSRKKMLDKIELEEIIPS
HCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
SRKYPFINFKAEREMGNDFVTVENLSVTIDGEKILDNISFILRPGDKAAIIGQNDIQTTA
CCCCCEEEEEEHHCCCCCEEEEEEEEEEECHHHHHCCCCEEEECCCCEEEECCCCHHHHH
LMRALADDIDYEGTIKWGVTTSRSYLPKDNSRDFASDESILEWLRQFASKGEDDDTFLRG
HHHHHHHCCCCCCEEEECEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
FLGRMLFSGDEVKKSVNVLSGGEKVRVMLSKLMLLKSNVLLLDDPTNHLDLESISSLNDG
HHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH
IKDFKESVIFTSHDHEFIQTIANHIVVISKNGVIDRIDETYDEFLENKDVQAKVAELWK
HHHHHHCEEEECCCHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MLTVSDVSLRFSDRKLFDDVNIKFTAGNTYGLIGANGAGKSTFLKILAGDIEPTTGHISL
CEEEECEEEEECCCHHCCCCEEEEECCCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEC
GPDERLSVLRQNHFDYEEERAIDVVIMGNEQLYSIMKEKDAIYMKPDFSEEDGVRAAELE
CCHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCEEEECC
GSFAELGGWEAESEASQLLQNLNIPEELHYQSMSELTNGDKVKVLLAKALFGKPDVLLLD
CCHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCEEEEE
EPTNGLDIQSISWLEDFLIDFENTVIVVSHDRHFLNKVCTHMADLDFGKIKLFVGNYDFW
CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHH
KQSSELAARLQADRNAKAEEKIKELQEFVARFSANASKSKQATSRKKMLDKIELEEIIPS
HCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
SRKYPFINFKAEREMGNDFVTVENLSVTIDGEKILDNISFILRPGDKAAIIGQNDIQTTA
CCCCCEEEEEEHHCCCCCEEEEEEEEEEECHHHHHCCCCEEEECCCCEEEECCCCHHHHH
LMRALADDIDYEGTIKWGVTTSRSYLPKDNSRDFASDESILEWLRQFASKGEDDDTFLRG
HHHHHHHCCCCCCEEEECEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH
FLGRMLFSGDEVKKSVNVLSGGEKVRVMLSKLMLLKSNVLLLDDPTNHLDLESISSLNDG
HHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH
IKDFKESVIFTSHDHEFIQTIANHIVVISKNGVIDRIDETYDEFLENKDVQAKVAELWK
HHHHHHCEEEECCCHHHHHHHHHCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]