| Definition | Prosthecochloris aestuarii DSM 271 chromosome, complete genome. |
|---|---|
| Accession | NC_011059 |
| Length | 2,512,923 |
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The map label for this gene is icd [H]
Identifier: 194334482
GI number: 194334482
Start: 1826892
End: 1829111
Strand: Reverse
Name: icd [H]
Synonym: Paes_1677
Alternate gene names: 194334482
Gene position: 1829111-1826892 (Counterclockwise)
Preceding gene: 194334483
Following gene: 194334478
Centisome position: 72.79
GC content: 49.46
Gene sequence:
>2220_bases ATGGCAAAAATCATCTATACCAAAATCGATGAGGCGCCGGCCCTTGCGACCTACTCGCTGCTGCCGATCATTCAGGCATT TACCAGTGGTACCGGTGTTGAAGTTGAAACCCGTGATATCTCCCTTGCCGGACGAATTATCGCTAATTTTCCTGATAATC TGACCCCTGAACAGCAGATCCCTGATTATCTCTCCGAACTTGGCGAGCTTGCCAAGACCAAGGAGGCTAATATCATAAAA CTTCCGAACATCAGCGCATCTATTCCTCAGCTGCAGGCTGCTATCAAGGAGCTTCAGTCGAAAGGTTACAATGTTCCTGA CTATCCTGAAGAACCGAAAAACGATGCTGAAAAAGAGATCAAAGTCCGTTACGCCAAGGTTCTTGGCAGTGCGGTCAATC CGGTATTGCGTGAAGGCAACTCCGACAGGCGCGCAGCGGCTTCGGTCAAGCAGTATGCTCAGAACAATCCTCATCGTCTG AGAGCGTGGGAATCCGGCTCTAAAGCCAGTGTTGCGTATATGGAGAGCGGTGATTTTTACGAAACCGAAAAGTCGGCGAC CATGAACGGTGCCGATAGTGTTCGTATCGAGTATGTTGACGGTGATGGTAACGTGACGGTGCTGAAAGACAGTCTTTCGC TTCTTGATGGTGAAGTGATCGATACCTCCATCATGAACGTTCGTAAGCTTCGCGATTTTTATGCGGCTCAGATTGAGCGG TCGAAAAATGATGATATGCTGCTTTCGCTGCACCTGAAAGCGACCATGATGAAGGTTTCTGACCCGATTATGTTCGGTCA TGCTGTATTGGTTTTTTATAAGGATGTTTTTGACAAGCATGGCGACACATTCAAAGCTCTTGGCGTCAACGTGAATAACG GTCTTGGAGATGTTTACGCAAAGATCCAGTCTCTTCCTGAAGACAAGAGAGCTGAAATCGAAGCCGACATCCAGGCTGTC TACCCGAGCCGCCCGGCGCTTGCTATGGTTGATTCCGATAAAGGGATTACCAACCTTCATGTTCCCAACGATATCATCAT CGATGCCTCAATGCCTGTCGTGATCCGTGACGGCGGCAAAATGTGGGGTCCTGATGGTGAACTGCATGATACAACGGCTA TGATTCCTGATCGTTGTTATGCCACGATGTATCAGGAGATGATCGAAGATTGTCAGAAAAACGGTGCTTATGATGTTTCC ACCATGGGCAGCGTTTCCAACGTCGGTCTGATGGCTCAGAAAGCAGAAGAGTACGGCTCTCATGACAAAACCTTCGAGGC TCCGGGTGATGGCGTCATTCGAGTGGTTGACGGATCCGGAAAGGCAATGCTTGAGCAGGTTGTCGAAACAGGCGATATTT ACAGAATGTGCCAGGTTAAGGATGCTCCTATCCGCGACTGGGTGAAGCTTGCTGTGAACAGAGCAAAAGCCACCGGCGTA CCGGCTGTGTTCTGGCTTGACAAAGAACGTGCTCATCACGTTCAGTTGATTGAAAAAGTCACAGCCTATCTGAAAGAGCA CGATACCGAAGGACTCGATATCAGAATCATGTCTCCGGTAGAAGCGATGCGCTTCTCGCTGGAACGCATCAGAGCGGGTA AGGATACCATTTCGGTTACCGGTAACGTTCTCAGAGATTACCTGACTGATCTTTTCCCGATCCTTGAACTTGGCACCAGC GCCAAAATGCTTTCTATCGTTCCGCTGATGAACGGCGGCGGTCTGTTTGAGACCGGTGCAGGCGGTTCTGCTCCTAAACA TGTTCAGCAGTTTCTTAAAGAGGGTCATCTGAGATGGGACTCACTGGGTGAAATGCTTGCTCTTGGCGTTTCTCTTGAAC ATCTTGCCGCGGCATTCAAGAACGATAAAGCCCAGGTTCTTGCTGACACGGTCGATCAGGCGGTCGGTCAGTATCTTGAA AACAGAAAGTCTCCTTCTCGGAAAGTTAACGAGATTGATAACCGTGGAAGCCACTACTATTTCGCACTTTATTGGGCACA GGCTCTTGCCGCACAGGACAAGGACCAGGAGCTCAAAGCGAAGTTTGCAGGTATTGCTGAATCGATGGCTGCCAGTGAGG CTGCTATCATCGATGAGCTGAACGCTGCACAGGGCAGCGCGGTCGATGTCGATGGCTATTTCATGCCTGACGATGAAAAA GCTTCACAGGCAATGCGCCCGAGTGCTACCTTGAATGCAATTATTGATGCGCTGAAGTAA
Upstream 100 bases:
>100_bases TGCGGTTCCTCTGCTCCGTAACGGTGATATGCTATGATCTGAAGCAGGGGGAATATCTATTAACTCATTCCGTTCATCCT TAAAACTATTTTGAACTGAT
Downstream 100 bases:
>100_bases GAACACCAGTGCTCATATGATGCTTGCAAAGCCTCCCGGATTTTCCGGGGGGCTTTTTTTTTGAATGGTGAATGGTTCCG GGTAAAGGATTTCAGTCCAC
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 739; Mature: 738
Protein sequence:
>739_residues MAKIIYTKIDEAPALATYSLLPIIQAFTSGTGVEVETRDISLAGRIIANFPDNLTPEQQIPDYLSELGELAKTKEANIIK LPNISASIPQLQAAIKELQSKGYNVPDYPEEPKNDAEKEIKVRYAKVLGSAVNPVLREGNSDRRAAASVKQYAQNNPHRL RAWESGSKASVAYMESGDFYETEKSATMNGADSVRIEYVDGDGNVTVLKDSLSLLDGEVIDTSIMNVRKLRDFYAAQIER SKNDDMLLSLHLKATMMKVSDPIMFGHAVLVFYKDVFDKHGDTFKALGVNVNNGLGDVYAKIQSLPEDKRAEIEADIQAV YPSRPALAMVDSDKGITNLHVPNDIIIDASMPVVIRDGGKMWGPDGELHDTTAMIPDRCYATMYQEMIEDCQKNGAYDVS TMGSVSNVGLMAQKAEEYGSHDKTFEAPGDGVIRVVDGSGKAMLEQVVETGDIYRMCQVKDAPIRDWVKLAVNRAKATGV PAVFWLDKERAHHVQLIEKVTAYLKEHDTEGLDIRIMSPVEAMRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTS AKMLSIVPLMNGGGLFETGAGGSAPKHVQQFLKEGHLRWDSLGEMLALGVSLEHLAAAFKNDKAQVLADTVDQAVGQYLE NRKSPSRKVNEIDNRGSHYYFALYWAQALAAQDKDQELKAKFAGIAESMAASEAAIIDELNAAQGSAVDVDGYFMPDDEK ASQAMRPSATLNAIIDALK
Sequences:
>Translated_739_residues MAKIIYTKIDEAPALATYSLLPIIQAFTSGTGVEVETRDISLAGRIIANFPDNLTPEQQIPDYLSELGELAKTKEANIIK LPNISASIPQLQAAIKELQSKGYNVPDYPEEPKNDAEKEIKVRYAKVLGSAVNPVLREGNSDRRAAASVKQYAQNNPHRL RAWESGSKASVAYMESGDFYETEKSATMNGADSVRIEYVDGDGNVTVLKDSLSLLDGEVIDTSIMNVRKLRDFYAAQIER SKNDDMLLSLHLKATMMKVSDPIMFGHAVLVFYKDVFDKHGDTFKALGVNVNNGLGDVYAKIQSLPEDKRAEIEADIQAV YPSRPALAMVDSDKGITNLHVPNDIIIDASMPVVIRDGGKMWGPDGELHDTTAMIPDRCYATMYQEMIEDCQKNGAYDVS TMGSVSNVGLMAQKAEEYGSHDKTFEAPGDGVIRVVDGSGKAMLEQVVETGDIYRMCQVKDAPIRDWVKLAVNRAKATGV PAVFWLDKERAHHVQLIEKVTAYLKEHDTEGLDIRIMSPVEAMRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTS AKMLSIVPLMNGGGLFETGAGGSAPKHVQQFLKEGHLRWDSLGEMLALGVSLEHLAAAFKNDKAQVLADTVDQAVGQYLE NRKSPSRKVNEIDNRGSHYYFALYWAQALAAQDKDQELKAKFAGIAESMAASEAAIIDELNAAQGSAVDVDGYFMPDDEK ASQAMRPSATLNAIIDALK >Mature_738_residues AKIIYTKIDEAPALATYSLLPIIQAFTSGTGVEVETRDISLAGRIIANFPDNLTPEQQIPDYLSELGELAKTKEANIIKL PNISASIPQLQAAIKELQSKGYNVPDYPEEPKNDAEKEIKVRYAKVLGSAVNPVLREGNSDRRAAASVKQYAQNNPHRLR AWESGSKASVAYMESGDFYETEKSATMNGADSVRIEYVDGDGNVTVLKDSLSLLDGEVIDTSIMNVRKLRDFYAAQIERS KNDDMLLSLHLKATMMKVSDPIMFGHAVLVFYKDVFDKHGDTFKALGVNVNNGLGDVYAKIQSLPEDKRAEIEADIQAVY PSRPALAMVDSDKGITNLHVPNDIIIDASMPVVIRDGGKMWGPDGELHDTTAMIPDRCYATMYQEMIEDCQKNGAYDVST MGSVSNVGLMAQKAEEYGSHDKTFEAPGDGVIRVVDGSGKAMLEQVVETGDIYRMCQVKDAPIRDWVKLAVNRAKATGVP AVFWLDKERAHHVQLIEKVTAYLKEHDTEGLDIRIMSPVEAMRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSA KMLSIVPLMNGGGLFETGAGGSAPKHVQQFLKEGHLRWDSLGEMLALGVSLEHLAAAFKNDKAQVLADTVDQAVGQYLEN RKSPSRKVNEIDNRGSHYYFALYWAQALAAQDKDQELKAKFAGIAESMAASEAAIIDELNAAQGSAVDVDGYFMPDDEKA SQAMRPSATLNAIIDALK
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 81029; Mature: 80898
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKIIYTKIDEAPALATYSLLPIIQAFTSGTGVEVETRDISLAGRIIANFPDNLTPEQQI CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCCCCCCHHHH PDYLSELGELAKTKEANIIKLPNISASIPQLQAAIKELQSKGYNVPDYPEEPKNDAEKEI HHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH KVRYAKVLGSAVNPVLREGNSDRRAAASVKQYAQNNPHRLRAWESGSKASVAYMESGDFY HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCE ETEKSATMNGADSVRIEYVDGDGNVTVLKDSLSLLDGEVIDTSIMNVRKLRDFYAAQIER ECCCCCCCCCCCCEEEEEEECCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC SKNDDMLLSLHLKATMMKVSDPIMFGHAVLVFYKDVFDKHGDTFKALGVNVNNGLGDVYA CCCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHH KIQSLPEDKRAEIEADIQAVYPSRPALAMVDSDKGITNLHVPNDIIIDASMPVVIRDGGK HHHHCCCCHHHHHHHHHHEECCCCCEEEEEECCCCCEEEECCCCEEEECCCCEEEECCCC MWGPDGELHDTTAMIPDRCYATMYQEMIEDCQKNGAYDVSTMGSVSNVGLMAQKAEEYGS CCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCC HDKTFEAPGDGVIRVVDGSGKAMLEQVVETGDIYRMCQVKDAPIRDWVKLAVNRAKATGV CCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC PAVFWLDKERAHHVQLIEKVTAYLKEHDTEGLDIRIMSPVEAMRFSLERIRAGKDTISVT CEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEHH GNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFLKEGHLRWD HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCHH SLGEMLALGVSLEHLAAAFKNDKAQVLADTVDQAVGQYLENRKSPSRKVNEIDNRGSHYY HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEE FALYWAQALAAQDKDQELKAKFAGIAESMAASEAAIIDELNAAQGSAVDVDGYFMPDDEK EHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEECCCCHH ASQAMRPSATLNAIIDALK HHHHCCCCHHHHHHHHHCC >Mature Secondary Structure AKIIYTKIDEAPALATYSLLPIIQAFTSGTGVEVETRDISLAGRIIANFPDNLTPEQQI CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCCCCCCHHHH PDYLSELGELAKTKEANIIKLPNISASIPQLQAAIKELQSKGYNVPDYPEEPKNDAEKEI HHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH KVRYAKVLGSAVNPVLREGNSDRRAAASVKQYAQNNPHRLRAWESGSKASVAYMESGDFY HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCE ETEKSATMNGADSVRIEYVDGDGNVTVLKDSLSLLDGEVIDTSIMNVRKLRDFYAAQIER ECCCCCCCCCCCCEEEEEEECCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC SKNDDMLLSLHLKATMMKVSDPIMFGHAVLVFYKDVFDKHGDTFKALGVNVNNGLGDVYA CCCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHH KIQSLPEDKRAEIEADIQAVYPSRPALAMVDSDKGITNLHVPNDIIIDASMPVVIRDGGK HHHHCCCCHHHHHHHHHHEECCCCCEEEEEECCCCCEEEECCCCEEEECCCCEEEECCCC MWGPDGELHDTTAMIPDRCYATMYQEMIEDCQKNGAYDVSTMGSVSNVGLMAQKAEEYGS CCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCC HDKTFEAPGDGVIRVVDGSGKAMLEQVVETGDIYRMCQVKDAPIRDWVKLAVNRAKATGV CCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC PAVFWLDKERAHHVQLIEKVTAYLKEHDTEGLDIRIMSPVEAMRFSLERIRAGKDTISVT CEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCEEEHH GNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFLKEGHLRWD HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCHH SLGEMLALGVSLEHLAAAFKNDKAQVLADTVDQAVGQYLENRKSPSRKVNEIDNRGSHYY HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEE FALYWAQALAAQDKDQELKAKFAGIAESMAASEAAIIDELNAAQGSAVDVDGYFMPDDEK EHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEECCCCHH ASQAMRPSATLNAIIDALK HHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]