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The map label for this gene is yfdZ [H]

Identifier: 193212608

GI number: 193212608

Start: 1047520

End: 1048734

Strand: Direct

Name: yfdZ [H]

Synonym: Cpar_0952

Alternate gene names: 193212608

Gene position: 1047520-1048734 (Clockwise)

Preceding gene: 193212607

Following gene: 193212614

Centisome position: 45.76

GC content: 54.16

Gene sequence:

>1215_bases
ATGTTTGACGAGATTGAATTCGACAAGATCAAGAGATTGCCGAAATATGTTTTTGCTGCCGTCAATGAGCTGAAAATGGC
CGAGCGGCGAGCCGGCGAGGATGTGATCGATTTTTCGATGGGCAATCCCGACGGCCCGACGCCGCAGCATATCATCGACA
AGCTCGTCGAAAGTGTCCAGAAACCGAAGACCCACGGCTATTCGGTCTCCAAAGGCATTTACAAACTGCGTGGCGCTGTA
GGCACATGGTACCGCAACAAGTACAATGTCGATCTCGATCTCGACCGCGAGGTGGTTGTAACGATGGGTTCAAAAGAGGG
GTACGTGCACCTCGTGCAGGCCATCACCAATCCCGGCGATCTGGCCATCGTGCCCGACCCGTGCTACCCGATTCACTCGC
AGGCGTTCATTCTTGCCGGCGGGAACGTGCATCGCATGAAGCTGGAGATGAACGACGACTACACGCTCGACGAGGAGGCG
TTTTTCCATAATATCGAAACCGTATTCCGGGAATCATCGCCGAAGCCGAAGTATCTCGTAGTCAATTTCCCGAACAACCC
GACCACCGCAACGGTCGAACTGCCTTTCTACGAACGTCTGGTCGAGCTGGCGCGCCGCGAACGTTTTTACATCATCAGCG
ACATCGCTTATGCTGAAATTACTTTCGACGGCTATGTGACTCCGTCGATTCTTCAGGTGCCGGGGGCGAAAGATGTCGCC
GTCGAGAGCTACACGCTTTCCAAAACCTACAACATGGCTGGCTGGCGCATGGGCTTCATGGTGGGCAACGCTAAGCTGAT
CGGAGCGTTGGAAAAGATCAAGAGTTGGCTTGATTATGGCACTTTTACACCGATTCAGGTTGCATCGACCATTGCGCTTA
CCGGCGATCAGAGCTGCGTCGATGAAATCAGGGAGGTGTACCGCAAACGGCGCGACGTGCTGATTTCAAGCTTCTCCAAT
GCCGGTTGGGACATTGTGACGCCCAAGGCCTCGATGTTCGTGTGGGCCAGGATCCCCGAATCGATGCGCCATCTGGGGAG
TCTCGAATTCAGCAAGAAGCTGCTCATAGAGGGGAAGGTGGCCGTGAGTCCCGGCATCGGCTTTGGCGCTTATGGTGACG
AATACGTACGTGTAGCCATGATCGAGAATGAGGAGCGCATTCGTCAGGCAGCAAGGAATATCAAGCGCTTTTTGAAAAAT
AATGCCGGGCAGTGA

Upstream 100 bases:

>100_bases
CTATGGAGATCAACGGCTTTTTGTTTATGATTGGAGTTGTTTTCATAACCTATAGTGTCACAACCGCTTCTGTTTTAACG
ATTTTTCGGAAACCATTCCC

Downstream 100 bases:

>100_bases
CGAGCTGGAACGCAACGAGTGACGAGAATCAAGAGAGGTGCTGGAAACGGCACCTCTTTTTTTTGTTCACGTTGTCGATT
GCGTTCACAATGTCAATGCG

Product: aspartate aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MFDEIEFDKIKRLPKYVFAAVNELKMAERRAGEDVIDFSMGNPDGPTPQHIIDKLVESVQKPKTHGYSVSKGIYKLRGAV
GTWYRNKYNVDLDLDREVVVTMGSKEGYVHLVQAITNPGDLAIVPDPCYPIHSQAFILAGGNVHRMKLEMNDDYTLDEEA
FFHNIETVFRESSPKPKYLVVNFPNNPTTATVELPFYERLVELARRERFYIISDIAYAEITFDGYVTPSILQVPGAKDVA
VESYTLSKTYNMAGWRMGFMVGNAKLIGALEKIKSWLDYGTFTPIQVASTIALTGDQSCVDEIREVYRKRRDVLISSFSN
AGWDIVTPKASMFVWARIPESMRHLGSLEFSKKLLIEGKVAVSPGIGFGAYGDEYVRVAMIENEERIRQAARNIKRFLKN
NAGQ

Sequences:

>Translated_404_residues
MFDEIEFDKIKRLPKYVFAAVNELKMAERRAGEDVIDFSMGNPDGPTPQHIIDKLVESVQKPKTHGYSVSKGIYKLRGAV
GTWYRNKYNVDLDLDREVVVTMGSKEGYVHLVQAITNPGDLAIVPDPCYPIHSQAFILAGGNVHRMKLEMNDDYTLDEEA
FFHNIETVFRESSPKPKYLVVNFPNNPTTATVELPFYERLVELARRERFYIISDIAYAEITFDGYVTPSILQVPGAKDVA
VESYTLSKTYNMAGWRMGFMVGNAKLIGALEKIKSWLDYGTFTPIQVASTIALTGDQSCVDEIREVYRKRRDVLISSFSN
AGWDIVTPKASMFVWARIPESMRHLGSLEFSKKLLIEGKVAVSPGIGFGAYGDEYVRVAMIENEERIRQAARNIKRFLKN
NAGQ
>Mature_404_residues
MFDEIEFDKIKRLPKYVFAAVNELKMAERRAGEDVIDFSMGNPDGPTPQHIIDKLVESVQKPKTHGYSVSKGIYKLRGAV
GTWYRNKYNVDLDLDREVVVTMGSKEGYVHLVQAITNPGDLAIVPDPCYPIHSQAFILAGGNVHRMKLEMNDDYTLDEEA
FFHNIETVFRESSPKPKYLVVNFPNNPTTATVELPFYERLVELARRERFYIISDIAYAEITFDGYVTPSILQVPGAKDVA
VESYTLSKTYNMAGWRMGFMVGNAKLIGALEKIKSWLDYGTFTPIQVASTIALTGDQSCVDEIREVYRKRRDVLISSFSN
AGWDIVTPKASMFVWARIPESMRHLGSLEFSKKLLIEGKVAVSPGIGFGAYGDEYVRVAMIENEERIRQAARNIKRFLKN
NAGQ

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=404, Percent_Identity=21.2871287128713, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI169881279, Length=404, Percent_Identity=21.2871287128713, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI56713256, Length=403, Percent_Identity=20.8436724565757, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI56713254, Length=403, Percent_Identity=20.8436724565757, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI7705897, Length=259, Percent_Identity=24.7104247104247, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI33469970, Length=259, Percent_Identity=24.7104247104247, Blast_Score=69, Evalue=7e-12,
Organism=Escherichia coli, GI1788722, Length=399, Percent_Identity=55.3884711779449, Blast_Score=468, Evalue=1e-133,
Organism=Escherichia coli, GI1786816, Length=391, Percent_Identity=24.2966751918159, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1788627, Length=394, Percent_Identity=27.4111675126904, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17567369, Length=396, Percent_Identity=21.4646464646465, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71994472, Length=404, Percent_Identity=24.2574257425743, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71994476, Length=404, Percent_Identity=24.2574257425743, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17567663, Length=393, Percent_Identity=23.9185750636132, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322401, Length=322, Percent_Identity=23.2919254658385, Blast_Score=83, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6323118, Length=342, Percent_Identity=23.0994152046784, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28573069, Length=395, Percent_Identity=22.5316455696203, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24646114, Length=395, Percent_Identity=22.5316455696203, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28573067, Length=395, Percent_Identity=22.5316455696203, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28573065, Length=395, Percent_Identity=22.5316455696203, Blast_Score=103, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 45669; Mature: 45669

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDEIEFDKIKRLPKYVFAAVNELKMAERRAGEDVIDFSMGNPDGPTPQHIIDKLVESVQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
KPKTHGYSVSKGIYKLRGAVGTWYRNKYNVDLDLDREVVVTMGSKEGYVHLVQAITNPGD
CCCCCCCCHHHHHHHHHCCHHHHCCCEEEEEECCCCEEEEEECCCCCCEEEEHHHCCCCC
LAIVPDPCYPIHSQAFILAGGNVHRMKLEMNDDYTLDEEAFFHNIETVFRESSPKPKYLV
EEEECCCCCCCCCCEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
VNFPNNPTTATVELPFYERLVELARRERFYIISDIAYAEITFDGYVTPSILQVPGAKDVA
EECCCCCCEEEEECHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCHHEECCCCCCEE
VESYTLSKTYNMAGWRMGFMVGNAKLIGALEKIKSWLDYGTFTPIQVASTIALTGDQSCV
EEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHEEEEECCCHHHH
DEIREVYRKRRDVLISSFSNAGWDIVTPKASMFVWARIPESMRHLGSLEFSKKLLIEGKV
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEECCHHHHHHCCCCCCCEEEEECEE
AVSPGIGFGAYGDEYVRVAMIENEERIRQAARNIKRFLKNNAGQ
EECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFDEIEFDKIKRLPKYVFAAVNELKMAERRAGEDVIDFSMGNPDGPTPQHIIDKLVESVQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
KPKTHGYSVSKGIYKLRGAVGTWYRNKYNVDLDLDREVVVTMGSKEGYVHLVQAITNPGD
CCCCCCCCHHHHHHHHHCCHHHHCCCEEEEEECCCCEEEEEECCCCCCEEEEHHHCCCCC
LAIVPDPCYPIHSQAFILAGGNVHRMKLEMNDDYTLDEEAFFHNIETVFRESSPKPKYLV
EEEECCCCCCCCCCEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
VNFPNNPTTATVELPFYERLVELARRERFYIISDIAYAEITFDGYVTPSILQVPGAKDVA
EECCCCCCEEEEECHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCHHEECCCCCCEE
VESYTLSKTYNMAGWRMGFMVGNAKLIGALEKIKSWLDYGTFTPIQVASTIALTGDQSCV
EEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHEEEEECCCHHHH
DEIREVYRKRRDVLISSFSNAGWDIVTPKASMFVWARIPESMRHLGSLEFSKKLLIEGKV
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEECCHHHHHHCCCCCCCEEEEECEE
AVSPGIGFGAYGDEYVRVAMIENEERIRQAARNIKRFLKNNAGQ
EECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]