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The map label for this gene is rfaF [H]

Identifier: 193211782

GI number: 193211782

Start: 127740

End: 128759

Strand: Direct

Name: rfaF [H]

Synonym: Cpar_0107

Alternate gene names: 193211782

Gene position: 127740-128759 (Clockwise)

Preceding gene: 193211781

Following gene: 193211783

Centisome position: 5.58

GC content: 61.37

Gene sequence:

>1020_bases
GTGACCGAACCCGGCGCGATCCGGCGTGTGCTCGTTGTGCGGCTCAGCGCCATCGGTGACATCGTGCTGACGACGCCCGT
CCTGTCCGAGCTGCATCGTGCGCTTCCGGATGCGCGGATCGACTACTGCACCAAGGCGCCCTTCGCGCCACTCGTCGCGT
CGAATCCAGCCGTGTCATCGGTCGTGACGCCGGAGTCGCTTACGCCCGGCGCGTCGTACGAGCTGGTGGTCGATCTGCAA
AACAATCGGCGCTCGCGCGCCCTCGTCCGAAAACTCCGGGTGGGCAAGGTCACTCGCTACCACAAGCGCAACTGGAAAAA
GCTCTTCCTAGTGCAGTTCAAGATCAACGTTTCGGATGGCTACCAGTCGGTTGTCGAACGGTATGGCGAGGCGCTCGACG
GTCTTGCGGTTCTTGCGCCAAAAGTCACCGCGCCGTGCAGCCTCTATCCGTCGCCGGAGGATCGCGCCTTTGCCGCCGAT
GTCCTCGGTGCGGACGGCCCGGTGCTTGCAGTCTGCTTCGGGGCGAACCACTTCACCAAGCGCTATCCACTCGAACGCTT
CGCCCGGATCATCGAAATCGTCACCTCCGAAACCCCGGCGCGCGTGTTGCTGCTCGGTGGCAAGGAGGACGAACCGGAGG
CCAAGAAATTAATTGCGATGCTTCCCGACACGGTGCGAAGCCGCGTGCTGTCGCTCGCCGGAAAGGCCAGTCTCATGCAA
TCTGCCGCGTTGCTCTCCAGAGTTGATGCGGTGCTCACCAACGACACCGGGCTGATGCACATCGCCTCGGCATTCGGCAA
AAAGCTCTTCGTCATTTTCGGTTCCTCGGTCAAAGAGTTCGGTTTCATGCCGTGGGGTACGGAGTACGAGCTGTTCGAGA
CGCCGGGACTTTCTTGCCGACCTTGCTCGCATATTGGTCGAAGCAAATGCCCGAAACGGCACTTCCGCTGCATGATGGAG
ATCGCGCCAGAGCCCATTGCGGCACGCATCGTCGAAACGCTCAACAAGAACTCAGCATGA

Upstream 100 bases:

>100_bases
AGGAGCGGATGAAAGAGGTCGCCTCTGAACGCATCACCAAAATCGGCGCGTCGAATCAGCACAAAAAGCCGGGCTACAAA
GCCTGGTGGGAGTTCTGGTC

Downstream 100 bases:

>100_bases
ATATCTATACCTGGAATATCAATGGTATCCGCGCCCGGCAGGAGGCGCTCGCTGCGTGGCTCGACAGCCGCAAGCCGGAC
TTCGTCGTGCTCGAAGAGGT

Product: glycosyl transferase family 9

Products: NA

Alternate protein names: ADP-heptose--LPS heptosyltransferase II [H]

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTEPGAIRRVLVVRLSAIGDIVLTTPVLSELHRALPDARIDYCTKAPFAPLVASNPAVSSVVTPESLTPGASYELVVDLQ
NNRRSRALVRKLRVGKVTRYHKRNWKKLFLVQFKINVSDGYQSVVERYGEALDGLAVLAPKVTAPCSLYPSPEDRAFAAD
VLGADGPVLAVCFGANHFTKRYPLERFARIIEIVTSETPARVLLLGGKEDEPEAKKLIAMLPDTVRSRVLSLAGKASLMQ
SAALLSRVDAVLTNDTGLMHIASAFGKKLFVIFGSSVKEFGFMPWGTEYELFETPGLSCRPCSHIGRSKCPKRHFRCMME
IAPEPIAARIVETLNKNSA

Sequences:

>Translated_339_residues
MTEPGAIRRVLVVRLSAIGDIVLTTPVLSELHRALPDARIDYCTKAPFAPLVASNPAVSSVVTPESLTPGASYELVVDLQ
NNRRSRALVRKLRVGKVTRYHKRNWKKLFLVQFKINVSDGYQSVVERYGEALDGLAVLAPKVTAPCSLYPSPEDRAFAAD
VLGADGPVLAVCFGANHFTKRYPLERFARIIEIVTSETPARVLLLGGKEDEPEAKKLIAMLPDTVRSRVLSLAGKASLMQ
SAALLSRVDAVLTNDTGLMHIASAFGKKLFVIFGSSVKEFGFMPWGTEYELFETPGLSCRPCSHIGRSKCPKRHFRCMME
IAPEPIAARIVETLNKNSA
>Mature_338_residues
TEPGAIRRVLVVRLSAIGDIVLTTPVLSELHRALPDARIDYCTKAPFAPLVASNPAVSSVVTPESLTPGASYELVVDLQN
NRRSRALVRKLRVGKVTRYHKRNWKKLFLVQFKINVSDGYQSVVERYGEALDGLAVLAPKVTAPCSLYPSPEDRAFAADV
LGADGPVLAVCFGANHFTKRYPLERFARIIEIVTSETPARVLLLGGKEDEPEAKKLIAMLPDTVRSRVLSLAGKASLMQS
AALLSRVDAVLTNDTGLMHIASAFGKKLFVIFGSSVKEFGFMPWGTEYELFETPGLSCRPCSHIGRSKCPKRHFRCMMEI
APEPIAARIVETLNKNSA

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790050, Length=296, Percent_Identity=26.0135135135135, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011910 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 37149; Mature: 37018

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPGAIRRVLVVRLSAIGDIVLTTPVLSELHRALPDARIDYCTKAPFAPLVASNPAVSS
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHCCCCCHHH
VVTPESLTPGASYELVVDLQNNRRSRALVRKLRVGKVTRYHKRNWKKLFLVQFKINVSDG
CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCHH
YQSVVERYGEALDGLAVLAPKVTAPCSLYPSPEDRAFAADVLGADGPVLAVCFGANHFTK
HHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCHHHH
RYPLERFARIIEIVTSETPARVLLLGGKEDEPEAKKLIAMLPDTVRSRVLSLAGKASLMQ
CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SAALLSRVDAVLTNDTGLMHIASAFGKKLFVIFGSSVKEFGFMPWGTEYELFETPGLSCR
HHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCCEEECCCCCCCC
PCSHIGRSKCPKRHFRCMMEIAPEPIAARIVETLNKNSA
CHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TEPGAIRRVLVVRLSAIGDIVLTTPVLSELHRALPDARIDYCTKAPFAPLVASNPAVSS
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHCCCCCHHH
VVTPESLTPGASYELVVDLQNNRRSRALVRKLRVGKVTRYHKRNWKKLFLVQFKINVSDG
CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCHH
YQSVVERYGEALDGLAVLAPKVTAPCSLYPSPEDRAFAADVLGADGPVLAVCFGANHFTK
HHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCHHHH
RYPLERFARIIEIVTSETPARVLLLGGKEDEPEAKKLIAMLPDTVRSRVLSLAGKASLMQ
CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SAALLSRVDAVLTNDTGLMHIASAFGKKLFVIFGSSVKEFGFMPWGTEYELFETPGLSCR
HHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCCEEECCCCCCCC
PCSHIGRSKCPKRHFRCMMEIAPEPIAARIVETLNKNSA
CHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]