Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192291405

Identifier: 192291405

GI number: 192291405

Start: 3289607

End: 3289858

Strand: Reverse

Name: 192291405

Synonym: Rpal_3029

Alternate gene names: NA

Gene position: 3289858-3289607 (Counterclockwise)

Preceding gene: 192291406

Following gene: 192291404

Centisome position: 57.27

GC content: 63.1

Gene sequence:

>252_bases
ATGACGTGGCGCGACACCGCAAAGGGCATCATCGCGAAGCTGACCGCCGATCTACCGAAGGACGCGCCGTTCTGCGACCG
CGTGAAGCTGCTGCGCGACAACTACCCGTTCGCGCGTCGATCCGGATTCGCATACCGGGTTTGGTGCGAGGAGCAGCGAA
AGTATCTGGCGCAGTTCTGCCCCCCGAAGGGATCGAAGCGCTTCCCTCGCCTGCCCCTCGAAATCATGCTGGACGAGGCC
GCACAGCAATGA

Upstream 100 bases:

>100_bases
GGGAAATGTCCGACCTGATCGAGTTCATGCTCGCTTGGGGCGCCGAGCAGACGCCACCGGTGGAGTGGAGCGAACCGCGA
GCGAAGAAGGAGGACGCGGC

Downstream 100 bases:

>100_bases
CAGACACAGCCCGCAGCGTCCGCGAGTGGATCGGCAAGACGCCAGATAGTCGGCCGCCGCCCCACGTCCGCGTACGGATA
TTCACAAAGCACGGCGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MTWRDTAKGIIAKLTADLPKDAPFCDRVKLLRDNYPFARRSGFAYRVWCEEQRKYLAQFCPPKGSKRFPRLPLEIMLDEA
AQQ

Sequences:

>Translated_83_residues
MTWRDTAKGIIAKLTADLPKDAPFCDRVKLLRDNYPFARRSGFAYRVWCEEQRKYLAQFCPPKGSKRFPRLPLEIMLDEA
AQQ
>Mature_82_residues
TWRDTAKGIIAKLTADLPKDAPFCDRVKLLRDNYPFARRSGFAYRVWCEEQRKYLAQFCPPKGSKRFPRLPLEIMLDEAA
QQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9735; Mature: 9604

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWRDTAKGIIAKLTADLPKDAPFCDRVKLLRDNYPFARRSGFAYRVWCEEQRKYLAQFC
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHC
PPKGSKRFPRLPLEIMLDEAAQQ
CCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TWRDTAKGIIAKLTADLPKDAPFCDRVKLLRDNYPFARRSGFAYRVWCEEQRKYLAQFC
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHC
PPKGSKRFPRLPLEIMLDEAAQQ
CCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA