| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192291147
Identifier: 192291147
GI number: 192291147
Start: 3010702
End: 3011247
Strand: Reverse
Name: 192291147
Synonym: Rpal_2768
Alternate gene names: NA
Gene position: 3011247-3010702 (Counterclockwise)
Preceding gene: 192291153
Following gene: 192291144
Centisome position: 52.42
GC content: 68.13
Gene sequence:
>546_bases ATGACCAGAACTGCTTTCCCCTTCGCCACCCAGGATGTGTCCGCGCTGGCGCGCGCGCTCAACCGCGAGCTCGACGCGCA AGGTCACAAGCTCGGCCATGTCGAGATGCTGAACCTGCTGGCGCGCTCGGCCGGCTATCGCAACTTCCAGCACTTCCGCG CCCAGTTCGACGCCGAGGAGCTGCTGCAACGCCAGCCCGAACCGGAGCCGGTCGCCGATCTGCAGAAGGTCGCGCAGGCG ATCCGTTACTTCGATGCGAGCGGTGTTCTCACCCGGTGGCCGAAGAAGGCCAGCCATCGCCTGCTCTGCCTGTGGGTGAT GTGGTCGCGCGTGCCGGCGGGGTGCGAAATGAGCGAGAAGCAGGTGAACGAGCTGCTGCTTGGCCATCACGACTTCGGCG ATCACGCGCTGCTGCGCCGCATGATGTGCGACACCGGCCTGATGACCCGCACCCGCGACGGCCGGGTGTATCGCCGGGTC GAGCAGAAGCCGCCGCCGGAGGGCGTCGCGTTGATCCGCCACCTCGCCCCGCGGCTCGCGGCCTGA
Upstream 100 bases:
>100_bases AACCTGCCTGTTTTCCTGATCGGCTGACACTTGTCCCGTGCCGCCGTCGTAAGTCAGCGACCAACGACATTCATCGTTCG GCACGATCGAGGATGAGGTC
Downstream 100 bases:
>100_bases CACTCGGTCATTGCGAGGCGCACCCGGATCGGCGCTCCGCGCCGTCCGAGCACACGCTCCGCGACGAAGCAATCCGGCTC CTGCATTGAGCTCTGGATTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MTRTAFPFATQDVSALARALNRELDAQGHKLGHVEMLNLLARSAGYRNFQHFRAQFDAEELLQRQPEPEPVADLQKVAQA IRYFDASGVLTRWPKKASHRLLCLWVMWSRVPAGCEMSEKQVNELLLGHHDFGDHALLRRMMCDTGLMTRTRDGRVYRRV EQKPPPEGVALIRHLAPRLAA
Sequences:
>Translated_181_residues MTRTAFPFATQDVSALARALNRELDAQGHKLGHVEMLNLLARSAGYRNFQHFRAQFDAEELLQRQPEPEPVADLQKVAQA IRYFDASGVLTRWPKKASHRLLCLWVMWSRVPAGCEMSEKQVNELLLGHHDFGDHALLRRMMCDTGLMTRTRDGRVYRRV EQKPPPEGVALIRHLAPRLAA >Mature_180_residues TRTAFPFATQDVSALARALNRELDAQGHKLGHVEMLNLLARSAGYRNFQHFRAQFDAEELLQRQPEPEPVADLQKVAQAI RYFDASGVLTRWPKKASHRLLCLWVMWSRVPAGCEMSEKQVNELLLGHHDFGDHALLRRMMCDTGLMTRTRDGRVYRRVE QKPPPEGVALIRHLAPRLAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20692; Mature: 20561
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTAFPFATQDVSALARALNRELDAQGHKLGHVEMLNLLARSAGYRNFQHFRAQFDAEE CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHH LLQRQPEPEPVADLQKVAQAIRYFDASGVLTRWPKKASHRLLCLWVMWSRVPAGCEMSEK HHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCHH QVNELLLGHHDFGDHALLRRMMCDTGLMTRTRDGRVYRRVEQKPPPEGVALIRHLAPRLA HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC A C >Mature Secondary Structure TRTAFPFATQDVSALARALNRELDAQGHKLGHVEMLNLLARSAGYRNFQHFRAQFDAEE CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHH LLQRQPEPEPVADLQKVAQAIRYFDASGVLTRWPKKASHRLLCLWVMWSRVPAGCEMSEK HHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCHH QVNELLLGHHDFGDHALLRRMMCDTGLMTRTRDGRVYRRVEQKPPPEGVALIRHLAPRLA HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA