| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is ycbL [C]
Identifier: 192289351
GI number: 192289351
Start: 981723
End: 982787
Strand: Reverse
Name: ycbL [C]
Synonym: Rpal_0923
Alternate gene names: 192289351
Gene position: 982787-981723 (Counterclockwise)
Preceding gene: 192289352
Following gene: 192289350
Centisome position: 17.11
GC content: 63.19
Gene sequence:
>1065_bases ATGCATAAGAAGACCGACGCGACCGAGACGTCGCACGACGAACTGCGCTATCTGCAGGACTGTCACCCCGGCCCCGACCA GGCGGTCGAGATCGTGCCGGGCGTGCTGTGGCTGCGGCTGCGGCTGCCGTTTCGGCTCAACCACGTGAACATCTATCTGC TCGCCGATGGCGACGCCTGGGCGATGGTCGACACCGGCTTCGGCAACGATGCGACCATCGCGGCCTGGGAGACGCTGTTC GACGGTGCGCTGGCTGGCTTTAGCATCAGCCGGGTGATCGTCACTCATGCCCATCCGGACCATGTCGGCATGGCGGGCTG GATCGTGCAGCGGTTCGGCTGTCCGCTCTACATGTCGCAGATCGAGTATCTGCAAGGCGTGTATCACCAGAACCGTCGCA CCGAAGAACGGCTGGTCAACAACCGCGCGTTCTTCCGCCGCCACGGCATCGACGAAGCCGTGATCGACCAACTCGTCGGC CGCGGCCAGGACTATCTGAAAAAGACCGTGCCGCTGCCGGCAGCGTATCGTCGGCTCGCCAAGGGCAAGGACATCACTGT CGGCGAGCGAACGTTCCGGATCATCACCGGCGCCGGCCACTCGCCCGATCAGGTGATGCTGTATTGCGAGGCCGACAAGC TATTCCTTTCCGCCGACCAGGTGCTGAGCAAGATCTCGCCGAATGTCAGCGTGTGGGCTCACGAGCCCGACGAAGACGCC CTCGGCTCGTATCTTTCGTCGCTCGCAGAGCTCGACACATTCCTGCCGGACGACGTCCTGGTGCTGCCCGGTCACGGCCT GCCGTTCCACGGCGTCAAGACCCGCATCAAGCAGCTGGCCGATCATCACGAGGAGCGCTGCGGGATGATCGCGGACGCTT GCCGTACCAAACCGATGAGTTCGGCCGAACTGGTACCGGTGGTATTTCACAAACACGTGCTCGATGCGCATCAAACCGGC TTCGCCGTCGGCGAGCTGATCGCCCACGTGAACTACATGCTGGCGCAGAACCGTTTGCAGCTGGCGCCCACCACGGACGG TGTGATGCGGTTCACCAACGTTTAA
Upstream 100 bases:
>100_bases TGGAATTTGAGACCTGTGAGGACTGCAGCCGCCCCTGACGGTTTTTCGGCTGGCGCCGCCGCTCCGCGCCCGGTAAGCCG GATCAGGGAGCATGCGCCGA
Downstream 100 bases:
>100_bases CGTTTGCAGCGTTGTCCGCGTATTCCCTGACAAGGCCGCATTCGAGCCAAGGCATTGATCTTCATCAAGCCTTGCCCTGC AGAACCGGTGATATGGATCG
Product: beta-lactamase domain-containing protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Superfamily Protein; Zn-Dependent Hydrolase; Beta Lactamase; Metallo-Beta-Lactamase Superfamily; Metallo-Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase; Zinc Metallohydrolase; Zinc Metallohydrolase Glyoxalase II Family; Zn-Dependent Hydrolases; Metallo-Dependent Enzymatic Protein; AMP-Dependent Synthetase And Ligase; Metal Dependent Hydrolase; Metallo-Hydrolase/Oxidoreductase Superfamily Protein; Zn-Dependent Hydrolase Including Glyoxylase-Like Protein
Number of amino acids: Translated: 354; Mature: 354
Protein sequence:
>354_residues MHKKTDATETSHDELRYLQDCHPGPDQAVEIVPGVLWLRLRLPFRLNHVNIYLLADGDAWAMVDTGFGNDATIAAWETLF DGALAGFSISRVIVTHAHPDHVGMAGWIVQRFGCPLYMSQIEYLQGVYHQNRRTEERLVNNRAFFRRHGIDEAVIDQLVG RGQDYLKKTVPLPAAYRRLAKGKDITVGERTFRIITGAGHSPDQVMLYCEADKLFLSADQVLSKISPNVSVWAHEPDEDA LGSYLSSLAELDTFLPDDVLVLPGHGLPFHGVKTRIKQLADHHEERCGMIADACRTKPMSSAELVPVVFHKHVLDAHQTG FAVGELIAHVNYMLAQNRLQLAPTTDGVMRFTNV
Sequences:
>Translated_354_residues MHKKTDATETSHDELRYLQDCHPGPDQAVEIVPGVLWLRLRLPFRLNHVNIYLLADGDAWAMVDTGFGNDATIAAWETLF DGALAGFSISRVIVTHAHPDHVGMAGWIVQRFGCPLYMSQIEYLQGVYHQNRRTEERLVNNRAFFRRHGIDEAVIDQLVG RGQDYLKKTVPLPAAYRRLAKGKDITVGERTFRIITGAGHSPDQVMLYCEADKLFLSADQVLSKISPNVSVWAHEPDEDA LGSYLSSLAELDTFLPDDVLVLPGHGLPFHGVKTRIKQLADHHEERCGMIADACRTKPMSSAELVPVVFHKHVLDAHQTG FAVGELIAHVNYMLAQNRLQLAPTTDGVMRFTNV >Mature_354_residues MHKKTDATETSHDELRYLQDCHPGPDQAVEIVPGVLWLRLRLPFRLNHVNIYLLADGDAWAMVDTGFGNDATIAAWETLF DGALAGFSISRVIVTHAHPDHVGMAGWIVQRFGCPLYMSQIEYLQGVYHQNRRTEERLVNNRAFFRRHGIDEAVIDQLVG RGQDYLKKTVPLPAAYRRLAKGKDITVGERTFRIITGAGHSPDQVMLYCEADKLFLSADQVLSKISPNVSVWAHEPDEDA LGSYLSSLAELDTFLPDDVLVLPGHGLPFHGVKTRIKQLADHHEERCGMIADACRTKPMSSAELVPVVFHKHVLDAHQTG FAVGELIAHVNYMLAQNRLQLAPTTDGVMRFTNV
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39561; Mature: 39561
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKKTDATETSHDELRYLQDCHPGPDQAVEIVPGVLWLRLRLPFRLNHVNIYLLADGDAW CCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHEEEEECCEEECEEEEEEEECCCEE AMVDTGFGNDATIAAWETLFDGALAGFSISRVIVTHAHPDHVGMAGWIVQRFGCPLYMSQ EEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHH IEYLQGVYHQNRRTEERLVNNRAFFRRHGIDEAVIDQLVGRGQDYLKKTVPLPAAYRRLA HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHH KGKDITVGERTFRIITGAGHSPDQVMLYCEADKLFLSADQVLSKISPNVSVWAHEPDEDA CCCCCEECCEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHH LGSYLSSLAELDTFLPDDVLVLPGHGLPFHGVKTRIKQLADHHEERCGMIADACRTKPMS HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SAELVPVVFHKHVLDAHQTGFAVGELIAHVNYMLAQNRLQLAPTTDGVMRFTNV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHEECCC >Mature Secondary Structure MHKKTDATETSHDELRYLQDCHPGPDQAVEIVPGVLWLRLRLPFRLNHVNIYLLADGDAW CCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHEEEEECCEEECEEEEEEEECCCEE AMVDTGFGNDATIAAWETLFDGALAGFSISRVIVTHAHPDHVGMAGWIVQRFGCPLYMSQ EEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHH IEYLQGVYHQNRRTEERLVNNRAFFRRHGIDEAVIDQLVGRGQDYLKKTVPLPAAYRRLA HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHH KGKDITVGERTFRIITGAGHSPDQVMLYCEADKLFLSADQVLSKISPNVSVWAHEPDEDA CCCCCEECCEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHH LGSYLSSLAELDTFLPDDVLVLPGHGLPFHGVKTRIKQLADHHEERCGMIADACRTKPMS HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SAELVPVVFHKHVLDAHQTGFAVGELIAHVNYMLAQNRLQLAPTTDGVMRFTNV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA