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The map label for this gene is ydfH [C]

Identifier: 190894915

GI number: 190894915

Start: 634201

End: 634917

Strand: Reverse

Name: ydfH [C]

Synonym: RHECIAT_PC0000580

Alternate gene names: 190894915

Gene position: 634917-634201 (Counterclockwise)

Preceding gene: 190894916

Following gene: 190894914

Centisome position: 58.17

GC content: 59.97

Gene sequence:

>717_bases
ATGGCGAAGACACCCAAGAGCAATCTCTACGAAGATCTGAAACGCCAGATTCTGACGATGGAACTGGACCCGGACGCCGA
TCTGGACGAGGCCAGTTTGAGCGAAAGGTACGGGCTTTCCCGGACGCCGGTGCGCGACATATTCCGCCGTCTTGCCGGCG
AGGGTTATATCGACATCCGCGAGAACAGGGGTGCGCGGGTCATCCCGATGAACCACTCCACGCTGCGCAATTTCTTTCTC
GTCGCGCCGATGATCTATGCGGCGGTCGGCCGTCTCGCCGTGCAGAATTTCAAGCCCGCGCAGCTTGTCGAGCTGAAGCA
GACGCAGGAGCGGTTTCGCGCCGCCAGCCAGAAGACGGACGCTCTGGCGATGGTGCTGGAGAACAACCGCTTTCACGAAA
TCTTCGGCGAGATGTCGGGCAACGTCTACATGCAGCCGAGCCTCGGCCGGCTGCTCATCGACCACGCGCGCATCGGTCAC
ACATTTTTCCGGCCGAAAAACGAGGACATGAGGCGGCGGCTCCAACTGGCCGTCGACCATCATGACGGCTTTATCGCAGC
GCTCGGCGCTCACGACGAGGATGCCGTCGTCGATCTCGTTTTTGAACACTGGGAATTGTCTCGCGAGAACATGGAGATGT
TCATCGCACCGCAAGGCCTCAAGGCGGACGCCTTCGTCGGCGGTCCAGCCACGCAAATATTGGAGAAGTCATCGTGA

Upstream 100 bases:

>100_bases
TCGAATACGAATTGTGTACGCAAAGTACACAATCGTTGACTCCTGCCGAAAGGCGTGTCATCTTTCCTGCAGTAGAGCAA
CGAATGGCCGGAGATCGACG

Downstream 100 bases:

>100_bases
AGTTTGAGGGGATCTACACGCCGGCGGTAACGCCGCTCGATCGAGATGGTCAGATCGACCGGGCCGGATTTGCAGCCGTG
CTCGAGTCGCTGATCGAAGC

Product: putative GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR Domain-Containing Protein; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein; GntR Family Regulatory Protein; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; Regulatory Protein; Regulatory Protein GntR; Transcription Regulator Protein; GntR Domain Protein; Transcriptional Regulator GntR Family Protein; GntR Transcriptional Regulator GntR; Transcriptional Regulator YdhC; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MAKTPKSNLYEDLKRQILTMELDPDADLDEASLSERYGLSRTPVRDIFRRLAGEGYIDIRENRGARVIPMNHSTLRNFFL
VAPMIYAAVGRLAVQNFKPAQLVELKQTQERFRAASQKTDALAMVLENNRFHEIFGEMSGNVYMQPSLGRLLIDHARIGH
TFFRPKNEDMRRRLQLAVDHHDGFIAALGAHDEDAVVDLVFEHWELSRENMEMFIAPQGLKADAFVGGPATQILEKSS

Sequences:

>Translated_238_residues
MAKTPKSNLYEDLKRQILTMELDPDADLDEASLSERYGLSRTPVRDIFRRLAGEGYIDIRENRGARVIPMNHSTLRNFFL
VAPMIYAAVGRLAVQNFKPAQLVELKQTQERFRAASQKTDALAMVLENNRFHEIFGEMSGNVYMQPSLGRLLIDHARIGH
TFFRPKNEDMRRRLQLAVDHHDGFIAALGAHDEDAVVDLVFEHWELSRENMEMFIAPQGLKADAFVGGPATQILEKSS
>Mature_237_residues
AKTPKSNLYEDLKRQILTMELDPDADLDEASLSERYGLSRTPVRDIFRRLAGEGYIDIRENRGARVIPMNHSTLRNFFLV
APMIYAAVGRLAVQNFKPAQLVELKQTQERFRAASQKTDALAMVLENNRFHEIFGEMSGNVYMQPSLGRLLIDHARIGHT
FFRPKNEDMRRRLQLAVDHHDGFIAALGAHDEDAVVDLVFEHWELSRENMEMFIAPQGLKADAFVGGPATQILEKSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=195, Percent_Identity=25.6410256410256, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27082; Mature: 26951

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTPKSNLYEDLKRQILTMELDPDADLDEASLSERYGLSRTPVRDIFRRLAGEGYIDIR
CCCCCHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEE
ENRGARVIPMNHSTLRNFFLVAPMIYAAVGRLAVQNFKPAQLVELKQTQERFRAASQKTD
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH
ALAMVLENNRFHEIFGEMSGNVYMQPSLGRLLIDHARIGHTFFRPKNEDMRRRLQLAVDH
HEEEEECCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHEEC
HDGFIAALGAHDEDAVVDLVFEHWELSRENMEMFIAPQGLKADAFVGGPATQILEKSS
CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCCHHHHHCCCC
>Mature Secondary Structure 
AKTPKSNLYEDLKRQILTMELDPDADLDEASLSERYGLSRTPVRDIFRRLAGEGYIDIR
CCCCHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEE
ENRGARVIPMNHSTLRNFFLVAPMIYAAVGRLAVQNFKPAQLVELKQTQERFRAASQKTD
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH
ALAMVLENNRFHEIFGEMSGNVYMQPSLGRLLIDHARIGHTFFRPKNEDMRRRLQLAVDH
HEEEEECCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHEEC
HDGFIAALGAHDEDAVVDLVFEHWELSRENMEMFIAPQGLKADAFVGGPATQILEKSS
CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA