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The map label for this gene is oppB [H]

Identifier: 190894656

GI number: 190894656

Start: 342172

End: 343134

Strand: Reverse

Name: oppB [H]

Synonym: RHECIAT_PC0000319

Alternate gene names: 190894656

Gene position: 343134-342172 (Counterclockwise)

Preceding gene: 190894657

Following gene: 190894655

Centisome position: 31.44

GC content: 64.38

Gene sequence:

>963_bases
GTGGCCTTGCTGCGCTACGTGCTAACCCGGTTCGCCATCTGGATTCCGTCCGTTCTCGTGGTGATGCTGGCCGTCTACGC
GCTGGCCTTCTACGGCGCCGGCGATCCGATCAAGCTCATCTTCCTGCGCGCGCCGGGCGACGTCGCCCATAATCCGCAGC
GCATCGAGGCCATCCGCGAAAGTGCGGGGCTCAACAGGCCCTTCATCGAACAGTTCGGCCTTTACATCTGGAACCTGCTG
CACGGCCAGTTCGGCAATTCGCTAACATCAGGCCGCGCCGTCTGGGCGATGGTCTCGGCTGCCGCCCCGGTCTCGTTCCA
GCTTGCCCTCTGCGCCATCATCCTGACGGCTGTCGTCGCGATCCCGCTCGGCATGATCGCCGCGCTGAACCAGAATTCGC
GCCTCGACTATGCCATTCTGGGCTCGGCGCTCTTCCTCTGGGCGATCCCCGCCTATGTCGCCGGTCCGCTGCTGATGGTC
GGCCTCATCGTGCTTTTGCCGGGCACGAGCGTGCCTTATGGCTGGGGCGGCGTCTTCGATGTCCGCATCCTGCTGCCGCT
GCTCGTGCTTTCCTTCCAGCCGATTGCGCTGATCGTGCGCCAGACGCGCGCCGCGGTGATCGAGGTGCTGTCGGAGGATT
TCGTTCGCACCGCCCGCGCCAAGGGCGTGCCCGAGATTGTCGTGGCGCTGCGCCATATCCTGCGGCCGGTGCTGACGCCT
GTGGTGACCCAGCTCGGCCTGATCATGATCACCATCGTCAATGGCGCCATCTTCGTCGAACTCGTCTTCGGCCTGCCGGG
TCTCGGCCGCCTGACGGTGCAGGCGCTGATCAATTCCGATTATCCCGTCATCCTGGCGATCACGCTGATCGGATCGTTCC
TGGTGATGGTGTCGAACCTCCTGGTGGACGTGCTCTATCCGCTGCTCGATCCGCGCGCCAACGATTCAAGAAGGAGCCGC
TGA

Upstream 100 bases:

>100_bases
GCGCGCGAGGGCCGCAAGGCCTTGGCGCAAGTTCGAGAAGAAGAGATGCGATCTGCCGGGCTTTAGCAAAGGGCGGGAAC
GCATCGACAACAGGTGGGAG

Downstream 100 bases:

>100_bases
CCATGTCCGCAATCCCTCTTTCCACCCCCGAAACCATCGAGGAGCCGCCGGTCAGCCTGTGGCGCGACGCCTGGCATCGG
CTGCGGCGCAACAAGCTCGC

Product: putative oligopeptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MALLRYVLTRFAIWIPSVLVVMLAVYALAFYGAGDPIKLIFLRAPGDVAHNPQRIEAIRESAGLNRPFIEQFGLYIWNLL
HGQFGNSLTSGRAVWAMVSAAAPVSFQLALCAIILTAVVAIPLGMIAALNQNSRLDYAILGSALFLWAIPAYVAGPLLMV
GLIVLLPGTSVPYGWGGVFDVRILLPLLVLSFQPIALIVRQTRAAVIEVLSEDFVRTARAKGVPEIVVALRHILRPVLTP
VVTQLGLIMITIVNGAIFVELVFGLPGLGRLTVQALINSDYPVILAITLIGSFLVMVSNLLVDVLYPLLDPRANDSRRSR

Sequences:

>Translated_320_residues
MALLRYVLTRFAIWIPSVLVVMLAVYALAFYGAGDPIKLIFLRAPGDVAHNPQRIEAIRESAGLNRPFIEQFGLYIWNLL
HGQFGNSLTSGRAVWAMVSAAAPVSFQLALCAIILTAVVAIPLGMIAALNQNSRLDYAILGSALFLWAIPAYVAGPLLMV
GLIVLLPGTSVPYGWGGVFDVRILLPLLVLSFQPIALIVRQTRAAVIEVLSEDFVRTARAKGVPEIVVALRHILRPVLTP
VVTQLGLIMITIVNGAIFVELVFGLPGLGRLTVQALINSDYPVILAITLIGSFLVMVSNLLVDVLYPLLDPRANDSRRSR
>Mature_319_residues
ALLRYVLTRFAIWIPSVLVVMLAVYALAFYGAGDPIKLIFLRAPGDVAHNPQRIEAIRESAGLNRPFIEQFGLYIWNLLH
GQFGNSLTSGRAVWAMVSAAAPVSFQLALCAIILTAVVAIPLGMIAALNQNSRLDYAILGSALFLWAIPAYVAGPLLMVG
LIVLLPGTSVPYGWGGVFDVRILLPLLVLSFQPIALIVRQTRAAVIEVLSEDFVRTARAKGVPEIVVALRHILRPVLTPV
VTQLGLIMITIVNGAIFVELVFGLPGLGRLTVQALINSDYPVILAITLIGSFLVMVSNLLVDVLYPLLDPRANDSRRSR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=314, Percent_Identity=35.3503184713376, Blast_Score=184, Evalue=5e-48,
Organism=Escherichia coli, GI1789965, Length=343, Percent_Identity=32.9446064139942, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787053, Length=316, Percent_Identity=37.0253164556962, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=33.2258064516129, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1787761, Length=305, Percent_Identity=33.1147540983607, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1788504, Length=286, Percent_Identity=28.3216783216783, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787550, Length=287, Percent_Identity=26.4808362369338, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34678; Mature: 34547

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLRYVLTRFAIWIPSVLVVMLAVYALAFYGAGDPIKLIFLRAPGDVAHNPQRIEAIRE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHH
SAGLNRPFIEQFGLYIWNLLHGQFGNSLTSGRAVWAMVSAAAPVSFQLALCAIILTAVVA
HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IPLGMIAALNQNSRLDYAILGSALFLWAIPAYVAGPLLMVGLIVLLPGTSVPYGWGGVFD
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
VRILLPLLVLSFQPIALIVRQTRAAVIEVLSEDFVRTARAKGVPEIVVALRHILRPVLTP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VVTQLGLIMITIVNGAIFVELVFGLPGLGRLTVQALINSDYPVILAITLIGSFLVMVSNL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LVDVLYPLLDPRANDSRRSR
HHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ALLRYVLTRFAIWIPSVLVVMLAVYALAFYGAGDPIKLIFLRAPGDVAHNPQRIEAIRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHH
SAGLNRPFIEQFGLYIWNLLHGQFGNSLTSGRAVWAMVSAAAPVSFQLALCAIILTAVVA
HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IPLGMIAALNQNSRLDYAILGSALFLWAIPAYVAGPLLMVGLIVLLPGTSVPYGWGGVFD
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
VRILLPLLVLSFQPIALIVRQTRAAVIEVLSEDFVRTARAKGVPEIVVALRHILRPVLTP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VVTQLGLIMITIVNGAIFVELVFGLPGLGRLTVQALINSDYPVILAITLIGSFLVMVSNL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LVDVLYPLLDPRANDSRRSR
HHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]