| Definition | Geobacter lovleyi SZ chromosome, complete genome. |
|---|---|
| Accession | NC_010814 |
| Length | 3,917,761 |
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The map label for this gene is yhjX [H]
Identifier: 189424002
GI number: 189424002
Start: 968673
End: 969896
Strand: Reverse
Name: yhjX [H]
Synonym: Glov_0936
Alternate gene names: 189424002
Gene position: 969896-968673 (Counterclockwise)
Preceding gene: 189424003
Following gene: 189424001
Centisome position: 24.76
GC content: 57.76
Gene sequence:
>1224_bases ATGTCAGAAGAACACTACAATCGATGGCTTATACTGATCTCGGCAATAATCATCAACATCTGTATCGGTACGCTGTACGC ATGGAGCGTCTTCGCCATGCCGCTGGGCAAACTGTTCGGCTGGGCTCCGCCGGCGCTGGCGCTGGTCTTTACGATCAACC ACGGTTTAAGCCCGGTGGCCATGATCGGCGGCGGCTACCTGCAGGATAAACTGGGTTCCAAAACAACCATTATCGTCGGC GGCCTGATGTTTACCATCGGCCTGTTTCTCTCCGGCTACGTTTCACAGGTCGGCATGCTCTACCTGACCTACAGCGCCCT GGCCGGTATCGGCGGTGGCGTGATCTATGCCGGCAACATCGGCAACACGGTCAAATTTTTCCCTGACAAGCGGGGACTGG CTGCCGGTCTCTGTGCAGCCGGCTACGGTTGCGGCGCCATGCTGGTGGCACCGATCGCCAGCGCCCTGATCATCAACTAC GGCGTGCTCAACACCTTCCAGATCCTTGGTACCGCCTTCTTTATCATTATCGCCATCTGTATCATGTTCATCAAAAAGGC CCCGGCAGGCTACAAACCGGCAGGCTGGACCCCTCCGGTCGTGGCAGCCACGGCAGCACAGCCGGCAGGCAATGACAGCA AGTGGACCCAGATGATCAGTGAAGGGATCTGGTGGGTGGTCATGATCATGCTGTTCTGCGGTGCCATGTCCGGCCTGATG GTTCTGGCCCACGCCTCCCCCATCGGCCAGATCATGTTCAAGCTGACCCCCATGAACGCAGCCTTCTTCGTCAGTATCAT CACCCTGGCCAACGCCCTGGGCCGTGTCGGCTTTGGCGCCCTGTCCGACCGGATCGGACGTTCCAACACCATCATGATCA TGTACATCGTATCGGCCCTGTCCATGCTCAACCTGGCGTTTACCACCAGCGTGGCAGGCTTTGTCGCCTCGGGTATCGGA TGCGGTGCGGTGTTTGGCGGATTCATGGGCACCATGCCGACCATTATCAGCGACCGCTACGGTCTGAAGAACTTCGGCGT CAACTACGGCATCACCTTTATCGGCTTCAGCCTTGCCGCAATCTTCGGACCGCTGACCGCCGCCAAGGTACGGGTTGCCA CCGGCAACTATGAGCAGGCGTTCTGGATCGCACTCGGCATCAACGTCGTGGGCTTTGTGTTCGCCTACATCTTCAGAACC ATGGATGTCAAATCAAAGAAATAA
Upstream 100 bases:
>100_bases TAACAGCTTACCTGCACGGTACCACGCGAAAAAAGACGTAATCTGCATAAAAGGCTAACTATCACCCATACGGGACCACA AGGTGCAAAGGGGTACACTT
Downstream 100 bases:
>100_bases CAGGCAGATGAGCCTCTTGCAAACGTTATGAGGAAGACCGGATACAAGGCGCACGGAGCGGAGCGACAGAGACATAACAG GTAGTCAGGCGAAGGAGTGA
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSEEHYNRWLILISAIIINICIGTLYAWSVFAMPLGKLFGWAPPALALVFTINHGLSPVAMIGGGYLQDKLGSKTTIIVG GLMFTIGLFLSGYVSQVGMLYLTYSALAGIGGGVIYAGNIGNTVKFFPDKRGLAAGLCAAGYGCGAMLVAPIASALIINY GVLNTFQILGTAFFIIIAICIMFIKKAPAGYKPAGWTPPVVAATAAQPAGNDSKWTQMISEGIWWVVMIMLFCGAMSGLM VLAHASPIGQIMFKLTPMNAAFFVSIITLANALGRVGFGALSDRIGRSNTIMIMYIVSALSMLNLAFTTSVAGFVASGIG CGAVFGGFMGTMPTIISDRYGLKNFGVNYGITFIGFSLAAIFGPLTAAKVRVATGNYEQAFWIALGINVVGFVFAYIFRT MDVKSKK
Sequences:
>Translated_407_residues MSEEHYNRWLILISAIIINICIGTLYAWSVFAMPLGKLFGWAPPALALVFTINHGLSPVAMIGGGYLQDKLGSKTTIIVG GLMFTIGLFLSGYVSQVGMLYLTYSALAGIGGGVIYAGNIGNTVKFFPDKRGLAAGLCAAGYGCGAMLVAPIASALIINY GVLNTFQILGTAFFIIIAICIMFIKKAPAGYKPAGWTPPVVAATAAQPAGNDSKWTQMISEGIWWVVMIMLFCGAMSGLM VLAHASPIGQIMFKLTPMNAAFFVSIITLANALGRVGFGALSDRIGRSNTIMIMYIVSALSMLNLAFTTSVAGFVASGIG CGAVFGGFMGTMPTIISDRYGLKNFGVNYGITFIGFSLAAIFGPLTAAKVRVATGNYEQAFWIALGINVVGFVFAYIFRT MDVKSKK >Mature_406_residues SEEHYNRWLILISAIIINICIGTLYAWSVFAMPLGKLFGWAPPALALVFTINHGLSPVAMIGGGYLQDKLGSKTTIIVGG LMFTIGLFLSGYVSQVGMLYLTYSALAGIGGGVIYAGNIGNTVKFFPDKRGLAAGLCAAGYGCGAMLVAPIASALIINYG VLNTFQILGTAFFIIIAICIMFIKKAPAGYKPAGWTPPVVAATAAQPAGNDSKWTQMISEGIWWVVMIMLFCGAMSGLMV LAHASPIGQIMFKLTPMNAAFFVSIITLANALGRVGFGALSDRIGRSNTIMIMYIVSALSMLNLAFTTSVAGFVASGIGC GAVFGGFMGTMPTIISDRYGLKNFGVNYGITFIGFSLAAIFGPLTAAKVRVATGNYEQAFWIALGINVVGFVFAYIFRTM DVKSKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI291621700, Length=401, Percent_Identity=22.9426433915212, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI42475555, Length=339, Percent_Identity=24.7787610619469, Blast_Score=71, Evalue=1e-12, Organism=Escherichia coli, GI1789969, Length=369, Percent_Identity=29.2682926829268, Blast_Score=155, Evalue=4e-39, Organism=Caenorhabditis elegans, GI193209150, Length=387, Percent_Identity=21.4470284237726, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24585866, Length=167, Percent_Identity=29.940119760479, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004741 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43009; Mature: 42878
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEEHYNRWLILISAIIINICIGTLYAWSVFAMPLGKLFGWAPPALALVFTINHGLSPVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCHHH MIGGGYLQDKLGSKTTIIVGGLMFTIGLFLSGYVSQVGMLYLTYSALAGIGGGVIYAGNI HHCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC GNTVKFFPDKRGLAAGLCAAGYGCGAMLVAPIASALIINYGVLNTFQILGTAFFIIIAIC CCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IMFIKKAPAGYKPAGWTPPVVAATAAQPAGNDSKWTQMISEGIWWVVMIMLFCGAMSGLM HHHHHCCCCCCCCCCCCCCHHEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH VLAHASPIGQIMFKLTPMNAAFFVSIITLANALGRVGFGALSDRIGRSNTIMIMYIVSAL HHHCCCHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHH SMLNLAFTTSVAGFVASGIGCGAVFGGFMGTMPTIISDRYGLKNFGVNYGITFIGFSLAA HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHH IFGPLTAAKVRVATGNYEQAFWIALGINVVGFVFAYIFRTMDVKSKK HHCCHHHHEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SEEHYNRWLILISAIIINICIGTLYAWSVFAMPLGKLFGWAPPALALVFTINHGLSPVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCHHH MIGGGYLQDKLGSKTTIIVGGLMFTIGLFLSGYVSQVGMLYLTYSALAGIGGGVIYAGNI HHCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC GNTVKFFPDKRGLAAGLCAAGYGCGAMLVAPIASALIINYGVLNTFQILGTAFFIIIAIC CCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IMFIKKAPAGYKPAGWTPPVVAATAAQPAGNDSKWTQMISEGIWWVVMIMLFCGAMSGLM HHHHHCCCCCCCCCCCCCCHHEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH VLAHASPIGQIMFKLTPMNAAFFVSIITLANALGRVGFGALSDRIGRSNTIMIMYIVSAL HHHCCCHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHH SMLNLAFTTSVAGFVASGIGCGAVFGGFMGTMPTIISDRYGLKNFGVNYGITFIGFSLAA HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHH IFGPLTAAKVRVATGNYEQAFWIALGINVVGFVFAYIFRTMDVKSKK HHCCHHHHEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]