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The map label for this gene is radC [C]

Identifier: 189423594

GI number: 189423594

Start: 494994

End: 495686

Strand: Reverse

Name: radC [C]

Synonym: Glov_0523

Alternate gene names: 189423594

Gene position: 495686-494994 (Counterclockwise)

Preceding gene: 189423595

Following gene: 189423591

Centisome position: 12.65

GC content: 58.44

Gene sequence:

>693_bases
ATGAGCAACAATGCCATCAAAGACTGGCCGGAAGATGAACGGCCACGGGAAAAGCTGCTCAAACGTGGCGCTGCAGCCCT
GTCCGATGCAGAGCTGCTGGCCCTGGTACTGCGTACCGGCGATGCTGCAGCAGGCAAAAGTGCCATTGATCTGGGACGGG
AACTGCTGGAACGGTTTGACGGCAACCTGCGGGAGCTGGCCCAGGCTGAACTGAATGAACTGCAACAGATCAAGGGACTG
GGCTTGGCCAAGGCTGCCTCAATCAAGGCAGCCTTTACGCTGGGGAAGCGTTTTCAGGCCCGGCGCTTGGAGACCCTGGA
ACGGTTTACCTCACCGGCCCAGGTCTTTGACTTTTTCCACCATGAGCTGCGGGATAACCGTAAAGAACTGTTTCTGACCC
TGCTGTTGGACGGTAAGAACCGGATCACCCGCAAGGTACAGGTATCAGAAGGCAGCCTGAATCAATCCATCGTCCATCCG
CGGGAGGTCTTTGCCCCGGCAGTGCGGGAATCGGCCGCTGCCGTGATCTTCATCCACAACCATCCCTCCGGCGATCCGGC
CCCCAGCCGGGAGGACCACGAGATCACCCGCCGCCTGAACGAGGCCGGTGAGATCCTGGGGATCAAGGTACTGGATCATA
TCATCATCGGGGATGGTGCCTACTTCAGCTTCGTAGAATCAGGACTGCTGTAA

Upstream 100 bases:

>100_bases
TGCTGAAGTTTGTACAGAGCCGCACGCTCTGGCCGTTTGTCTGGTATCGGGTGGCAGCAGGTATCGGGGTTATGGCACTT
CTGGGGGTTGGCCTGCTGTC

Downstream 100 bases:

>100_bases
AACTACTGCGACGTTTTACTTTTCCAATTCTTCCAACAGCTCCAGTGCAAAATTCTTGGCCCTGCCGGCCGGAGCGATCA
CCCCGTAGGCCATGGCTTCC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSNNAIKDWPEDERPREKLLKRGAAALSDAELLALVLRTGDAAAGKSAIDLGRELLERFDGNLRELAQAELNELQQIKGL
GLAKAASIKAAFTLGKRFQARRLETLERFTSPAQVFDFFHHELRDNRKELFLTLLLDGKNRITRKVQVSEGSLNQSIVHP
REVFAPAVRESAAAVIFIHNHPSGDPAPSREDHEITRRLNEAGEILGIKVLDHIIIGDGAYFSFVESGLL

Sequences:

>Translated_230_residues
MSNNAIKDWPEDERPREKLLKRGAAALSDAELLALVLRTGDAAAGKSAIDLGRELLERFDGNLRELAQAELNELQQIKGL
GLAKAASIKAAFTLGKRFQARRLETLERFTSPAQVFDFFHHELRDNRKELFLTLLLDGKNRITRKVQVSEGSLNQSIVHP
REVFAPAVRESAAAVIFIHNHPSGDPAPSREDHEITRRLNEAGEILGIKVLDHIIIGDGAYFSFVESGLL
>Mature_229_residues
SNNAIKDWPEDERPREKLLKRGAAALSDAELLALVLRTGDAAAGKSAIDLGRELLERFDGNLRELAQAELNELQQIKGLG
LAKAASIKAAFTLGKRFQARRLETLERFTSPAQVFDFFHHELRDNRKELFLTLLLDGKNRITRKVQVSEGSLNQSIVHPR
EVFAPAVRESAAAVIFIHNHPSGDPAPSREDHEITRRLNEAGEILGIKVLDHIIIGDGAYFSFVESGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=216, Percent_Identity=39.3518518518519, Blast_Score=163, Evalue=8e-42,
Organism=Escherichia coli, GI1788997, Length=155, Percent_Identity=38.7096774193548, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI2367100, Length=143, Percent_Identity=37.0629370629371, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788312, Length=138, Percent_Identity=38.4057971014493, Blast_Score=91, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y523_GEOLS (B3E339)

Other databases:

- EMBL:   CP001089
- RefSeq:   YP_001950771.1
- ProteinModelPortal:   B3E339
- SMR:   B3E339
- GeneID:   6367540
- GenomeReviews:   CP001089_GR
- KEGG:   glo:Glov_0523
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25550; Mature: 25419

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNAIKDWPEDERPREKLLKRGAAALSDAELLALVLRTGDAAAGKSAIDLGRELLERFD
CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
GNLRELAQAELNELQQIKGLGLAKAASIKAAFTLGKRFQARRLETLERFTSPAQVFDFFH
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
HELRDNRKELFLTLLLDGKNRITRKVQVSEGSLNQSIVHPREVFAPAVRESAAAVIFIHN
HHHHCCHHHEEEEEEECCCCHHEEEEEECCCCCCHHHCCHHHHHHHHHHCCCEEEEEEEC
HPSGDPAPSREDHEITRRLNEAGEILGIKVLDHIIIGDGAYFSFVESGLL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SNNAIKDWPEDERPREKLLKRGAAALSDAELLALVLRTGDAAAGKSAIDLGRELLERFD
CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
GNLRELAQAELNELQQIKGLGLAKAASIKAAFTLGKRFQARRLETLERFTSPAQVFDFFH
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
HELRDNRKELFLTLLLDGKNRITRKVQVSEGSLNQSIVHPREVFAPAVRESAAAVIFIHN
HHHHCCHHHEEEEEEECCCCHHEEEEEECCCCCCHHHCCHHHHHHHHHHCCCEEEEEEEC
HPSGDPAPSREDHEITRRLNEAGEILGIKVLDHIIIGDGAYFSFVESGLL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA