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The map label for this gene is tnpA [H]

Identifier: 189423591

GI number: 189423591

Start: 491825

End: 493078

Strand: Reverse

Name: tnpA [H]

Synonym: Glov_0520

Alternate gene names: 189423591

Gene position: 493078-491825 (Counterclockwise)

Preceding gene: 189423594

Following gene: 189423590

Centisome position: 12.59

GC content: 56.22

Gene sequence:

>1254_bases
ATGCAGCTCAAGTCTATACTGAATTTCGTTCAACCGCATCAAGGTTTTGTGTATGGCGCTGTCCACCAGCGAAACAAGGG
ACAGCGCACGGTCCTTGACATTGAGATCCGCCCCCGCAAGAACAGGCAGCCTGTCTGTTCCAGATGCGGCAAACCTGGTC
CCGGCTATGACACCTTGCCTGTGCGCCGGTTTGAGTTCGTGCCGCTATGGGGCATTGCCGTGTTCTTCCTCTACGCCATG
CGCCGGGTCAGTTGCCCATCCTGCGGTGTGAAGGTGGAACAAGTCCCCTGGGCCACCGGCAAGAACCACCTGACCACCAC
CTATGCCTGGTTCCTGGCCCGCTGGGCCAGGCGGTTGTCGTGGAAGGAAGTGGGGCAAGTGTTTCAGACCAGTTGGGACA
ACGTCTTCCGCTCGGTCAAAATGGCCGTTGCCTGGGGACTGGCCCACCGCGACCTCGACACCATAACCGCCATCGGCATC
GACGAGATTGCCTGGAAAAAGGGGCACAAGTACCTGACCCTGGTTTACCAGATCGATGCCGGATGCAAACGCCTGCTGTG
GGTCGGCAAGGAGCGGACCCAGAAAACGTTGCGGCAGTTCTTCAAGGAGTTTGGCAAAGAGCGAACAGCACACCTTCGGT
TCATCTGCAGCGACATGTGGAAGCCATACCTGCGGATCGTCGCCGAGGTTGCAGGTCAAGCCATGCATATCCTTGACCGG
TTCCATGTCATGACCCACTTCGGCAAAGCTGTCGACAAGGTCCGGGCAACGGAAGCCAGAGAACTGAAAGCCAAGGGCCA
GGAACCGGTGCTGACCGGTAGCCGCTGGTGCCTGCTCAAACGGCCTGAACACCTGACGGAGAAGCAGAGCATCAAGCTGA
ATGAACTGCTGGCCATTAACTTGAAAACCGTCCGGGCCTATCTCCTCAAAGAGGAGTTCCAGTTCTTCTGGCGCTATGCC
ACTGCGGGCTGGGCTGCCAGATTTCTGGATGCTTGGTGCAAAAGAACCATGAGGTCACGCATCATCCCGATGAAGAAGAT
TGCCAAGATGCTGCGCTCGCATCGGGAGCTGTTACTCAACTGGTTTCGGACCAAAGGGCAGGTTGCCTTGGGGGCCGTAG
AAGGATTCAACAACAAGGCTAAAGTGACCTCACGTAAAGCATACGGTTTCAGAAACTTTGAAGTGATGAAAATCGCCTTG
TATCATACACTTGGCAACCTGCCAGAACCTGAGGCTACCCACAGATTCTGCTGA

Upstream 100 bases:

>100_bases
GGTCTGAGCAGCTACCTGGTGAACGAAATAGAGCATCCCGCCTACAAATCTGTCATTGTGTGTTTCGACCAAGAAACCCA
ATACAGACAAGGAGAGCGGG

Downstream 100 bases:

>100_bases
AGAGCCAAATTGTTATGGGAAATGGATGAAAGGAGCAGTGACAATGGCACAGAAAGACTACTACGAGGCACTGGGTGTTG
CCAAGGATGCCTCAGCTGAC

Product: transposase IS204/IS1001/IS1096/IS1165 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MQLKSILNFVQPHQGFVYGAVHQRNKGQRTVLDIEIRPRKNRQPVCSRCGKPGPGYDTLPVRRFEFVPLWGIAVFFLYAM
RRVSCPSCGVKVEQVPWATGKNHLTTTYAWFLARWARRLSWKEVGQVFQTSWDNVFRSVKMAVAWGLAHRDLDTITAIGI
DEIAWKKGHKYLTLVYQIDAGCKRLLWVGKERTQKTLRQFFKEFGKERTAHLRFICSDMWKPYLRIVAEVAGQAMHILDR
FHVMTHFGKAVDKVRATEARELKAKGQEPVLTGSRWCLLKRPEHLTEKQSIKLNELLAINLKTVRAYLLKEEFQFFWRYA
TAGWAARFLDAWCKRTMRSRIIPMKKIAKMLRSHRELLLNWFRTKGQVALGAVEGFNNKAKVTSRKAYGFRNFEVMKIAL
YHTLGNLPEPEATHRFC

Sequences:

>Translated_417_residues
MQLKSILNFVQPHQGFVYGAVHQRNKGQRTVLDIEIRPRKNRQPVCSRCGKPGPGYDTLPVRRFEFVPLWGIAVFFLYAM
RRVSCPSCGVKVEQVPWATGKNHLTTTYAWFLARWARRLSWKEVGQVFQTSWDNVFRSVKMAVAWGLAHRDLDTITAIGI
DEIAWKKGHKYLTLVYQIDAGCKRLLWVGKERTQKTLRQFFKEFGKERTAHLRFICSDMWKPYLRIVAEVAGQAMHILDR
FHVMTHFGKAVDKVRATEARELKAKGQEPVLTGSRWCLLKRPEHLTEKQSIKLNELLAINLKTVRAYLLKEEFQFFWRYA
TAGWAARFLDAWCKRTMRSRIIPMKKIAKMLRSHRELLLNWFRTKGQVALGAVEGFNNKAKVTSRKAYGFRNFEVMKIAL
YHTLGNLPEPEATHRFC
>Mature_417_residues
MQLKSILNFVQPHQGFVYGAVHQRNKGQRTVLDIEIRPRKNRQPVCSRCGKPGPGYDTLPVRRFEFVPLWGIAVFFLYAM
RRVSCPSCGVKVEQVPWATGKNHLTTTYAWFLARWARRLSWKEVGQVFQTSWDNVFRSVKMAVAWGLAHRDLDTITAIGI
DEIAWKKGHKYLTLVYQIDAGCKRLLWVGKERTQKTLRQFFKEFGKERTAHLRFICSDMWKPYLRIVAEVAGQAMHILDR
FHVMTHFGKAVDKVRATEARELKAKGQEPVLTGSRWCLLKRPEHLTEKQSIKLNELLAINLKTVRAYLLKEEFQFFWRYA
TAGWAARFLDAWCKRTMRSRIIPMKKIAKMLRSHRELLLNWFRTKGQVALGAVEGFNNKAKVTSRKAYGFRNFEVMKIAL
YHTLGNLPEPEATHRFC

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 48648; Mature: 48648

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLKSILNFVQPHQGFVYGAVHQRNKGQRTVLDIEIRPRKNRQPVCSRCGKPGPGYDTLP
CCHHHHHHHHCCCCCEEEEEHHHCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCC
VRRFEFVPLWGIAVFFLYAMRRVSCPSCGVKVEQVPWATGKNHLTTTYAWFLARWARRLS
CCCEEECCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
WKEVGQVFQTSWDNVFRSVKMAVAWGLAHRDLDTITAIGIDEIAWKKGHKYLTLVYQIDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHCCCCEEEEEEEECH
GCKRLLWVGKERTQKTLRQFFKEFGKERTAHLRFICSDMWKPYLRIVAEVAGQAMHILDR
HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FHVMTHFGKAVDKVRATEARELKAKGQEPVLTGSRWCLLKRPEHLTEKQSIKLNELLAIN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCHHHCCCHHHHEEHH
LKTVRAYLLKEEFQFFWRYATAGWAARFLDAWCKRTMRSRIIPMKKIAKMLRSHRELLLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
WFRTKGQVALGAVEGFNNKAKVTSRKAYGFRNFEVMKIALYHTLGNLPEPEATHRFC
HHHCCCCEEEEEHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQLKSILNFVQPHQGFVYGAVHQRNKGQRTVLDIEIRPRKNRQPVCSRCGKPGPGYDTLP
CCHHHHHHHHCCCCCEEEEEHHHCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCC
VRRFEFVPLWGIAVFFLYAMRRVSCPSCGVKVEQVPWATGKNHLTTTYAWFLARWARRLS
CCCEEECCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCC
WKEVGQVFQTSWDNVFRSVKMAVAWGLAHRDLDTITAIGIDEIAWKKGHKYLTLVYQIDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHCCCCEEEEEEEECH
GCKRLLWVGKERTQKTLRQFFKEFGKERTAHLRFICSDMWKPYLRIVAEVAGQAMHILDR
HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FHVMTHFGKAVDKVRATEARELKAKGQEPVLTGSRWCLLKRPEHLTEKQSIKLNELLAIN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCHHHCCCHHHHEEHH
LKTVRAYLLKEEFQFFWRYATAGWAARFLDAWCKRTMRSRIIPMKKIAKMLRSHRELLLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
WFRTKGQVALGAVEGFNNKAKVTSRKAYGFRNFEVMKIALYHTLGNLPEPEATHRFC
HHHCCCCEEEEEHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]