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The map label for this gene is dgdR [H]

Identifier: 189353200

GI number: 189353200

Start: 1425585

End: 1426463

Strand: Direct

Name: dgdR [H]

Synonym: BMULJ_04436

Alternate gene names: 189353200

Gene position: 1425585-1426463 (Clockwise)

Preceding gene: 189353198

Following gene: 189353201

Centisome position: 57.64

GC content: 71.33

Gene sequence:

>879_bases
ATGCGACGCATGGCACGCCATCTCGATCTCGCGCTGCTGCGCACCTTTGTCACGATCGCCGATCATCGCAGCATGACGGC
GGCCGGCCATGCGTTGCACCTGACGCAGGGTGCGATCAGCCAGCAGGTCGCGCGGCTCGAAGCGCTGTCGGGGCCGCTGT
TCGTGCGCGAGCATCGCAACCTGCTGCTCACCGCGGCCGGCGAACGTCTGCTCGACTCGGCGCGCCGGCTGCTGGCCATG
CACGACGCCTTGCTGACGGAGATGACGAACGGCGCGATCGACGGCACGGTGCGCATCGGCGCGCCGCAGGATCTCGTCGC
CACCTGCGTCGCGCCGATACTGAAAGGCTTCGCGCAAGCGCATCCGCAAGTCGCGCTCACGCTCGTGTGCGCGGCATCGC
CGGAATTGCGGCGCGGGCTCAGGCAGGGCGACCTCGACGTCGCGCTGATCGAGACGCCGATCGGCGCGTCGACCGGCGAA
TGCCTCGCCGTCGACCGGCTCGTCTGGGTCGGTGCGAAAGGCGGCAGCGCATACCGCAGCACGCCGCTGCCGGTGTCGAT
GGTCGCGCAGACCTGCGCGTTCCGCCCGATCGTGCTCGACGCGCTGCGCGCCGGCGGCCGCACCTGGCGCACCGTATTCG
AGAACGGCAGCCTCGATGCGACGGCCGCCACCGTGCGCGCCGATCTCGCCGTGACCGTCTGGCTCGCGTCCACCGTGCCG
GCCGATCTCGACATCCTGCCCGCCGACTGCGGGCTGCCCGCGCTGCCGAATTTCGCGATCAACCTGCATCTGCCGCGCGG
CCAGCGCACGCCGGCTGCGACGGAACTCGCCCGCCACCTGCGCAACGGCTTCGCACGCGTGCGTACGGCGGCCGCCTAG

Upstream 100 bases:

>100_bases
AAGCGGCATGGCGTCTCCCGGTGGTCGTCCGCTTCGTTTTTACCGTTGCGCCACACATTACGACAGCGAAATCTTTTTAT
CGCTGCCATTAGCGCTCATA

Downstream 100 bases:

>100_bases
CAGCGTCAACGCAAGGCGAGAACACCGTGACGTGCCCGTGACGGCAGGTATCCCAAAGATTCGCGCATAGCCGGGCACGG
CCGTCATCTCGATCGACGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MRRMARHLDLALLRTFVTIADHRSMTAAGHALHLTQGAISQQVARLEALSGPLFVREHRNLLLTAAGERLLDSARRLLAM
HDALLTEMTNGAIDGTVRIGAPQDLVATCVAPILKGFAQAHPQVALTLVCAASPELRRGLRQGDLDVALIETPIGASTGE
CLAVDRLVWVGAKGGSAYRSTPLPVSMVAQTCAFRPIVLDALRAGGRTWRTVFENGSLDATAATVRADLAVTVWLASTVP
ADLDILPADCGLPALPNFAINLHLPRGQRTPAATELARHLRNGFARVRTAAA

Sequences:

>Translated_292_residues
MRRMARHLDLALLRTFVTIADHRSMTAAGHALHLTQGAISQQVARLEALSGPLFVREHRNLLLTAAGERLLDSARRLLAM
HDALLTEMTNGAIDGTVRIGAPQDLVATCVAPILKGFAQAHPQVALTLVCAASPELRRGLRQGDLDVALIETPIGASTGE
CLAVDRLVWVGAKGGSAYRSTPLPVSMVAQTCAFRPIVLDALRAGGRTWRTVFENGSLDATAATVRADLAVTVWLASTVP
ADLDILPADCGLPALPNFAINLHLPRGQRTPAATELARHLRNGFARVRTAAA
>Mature_292_residues
MRRMARHLDLALLRTFVTIADHRSMTAAGHALHLTQGAISQQVARLEALSGPLFVREHRNLLLTAAGERLLDSARRLLAM
HDALLTEMTNGAIDGTVRIGAPQDLVATCVAPILKGFAQAHPQVALTLVCAASPELRRGLRQGDLDVALIETPIGASTGE
CLAVDRLVWVGAKGGSAYRSTPLPVSMVAQTCAFRPIVLDALRAGGRTWRTVFENGSLDATAATVRADLAVTVWLASTVP
ADLDILPADCGLPALPNFAINLHLPRGQRTPAATELARHLRNGFARVRTAAA

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=252, Percent_Identity=31.7460317460317, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788297, Length=197, Percent_Identity=30.4568527918782, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI157672245, Length=168, Percent_Identity=29.7619047619048, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=149, Percent_Identity=28.1879194630872, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787806, Length=160, Percent_Identity=25.625, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788887, Length=157, Percent_Identity=30.5732484076433, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790208, Length=154, Percent_Identity=29.8701298701299, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31050; Mature: 31050

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRMARHLDLALLRTFVTIADHRSMTAAGHALHLTQGAISQQVARLEALSGPLFVREHRN
CCHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEHHHHHHHHHHHHHHHHCCCEEEECCCC
LLLTAAGERLLDSARRLLAMHDALLTEMTNGAIDGTVRIGAPQDLVATCVAPILKGFAQA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHC
HPQVALTLVCAASPELRRGLRQGDLDVALIETPIGASTGECLAVDRLVWVGAKGGSAYRS
CCCEEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCC
TPLPVSMVAQTCAFRPIVLDALRAGGRTWRTVFENGSLDATAATVRADLAVTVWLASTVP
CCCCHHHHHHHHCCCHHHHHHHHCCCCEEEHHHCCCCCCHHHHHHHHHHEEEEEEECCCC
ADLDILPADCGLPALPNFAINLHLPRGQRTPAATELARHLRNGFARVRTAAA
CCCEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRMARHLDLALLRTFVTIADHRSMTAAGHALHLTQGAISQQVARLEALSGPLFVREHRN
CCHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEHHHHHHHHHHHHHHHHCCCEEEECCCC
LLLTAAGERLLDSARRLLAMHDALLTEMTNGAIDGTVRIGAPQDLVATCVAPILKGFAQA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHC
HPQVALTLVCAASPELRRGLRQGDLDVALIETPIGASTGECLAVDRLVWVGAKGGSAYRS
CCCEEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCC
TPLPVSMVAQTCAFRPIVLDALRAGGRTWRTVFENGSLDATAATVRADLAVTVWLASTVP
CCCCHHHHHHHHCCCHHHHHHHHCCCCEEEHHHCCCCCCHHHHHHHHHHEEEEEEECCCC
ADLDILPADCGLPALPNFAINLHLPRGQRTPAATELARHLRNGFARVRTAAA
CCCEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]