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The map label for this gene is prdF

Identifier: 189353012

GI number: 189353012

Start: 1175590

End: 1176597

Strand: Direct

Name: prdF

Synonym: BMULJ_04246

Alternate gene names: NA

Gene position: 1175590-1176597 (Clockwise)

Preceding gene: 189353011

Following gene: 189353013

Centisome position: 47.53

GC content: 67.66

Gene sequence:

>1008_bases
ATGAAGATCTCCCGTTCCCTGTCCACCGTCGAAGTCCATACGGGCGGCGAAGCGTTCCGCATCGTCACGAGCGGGCTGCC
GCGTCTGCCGGGCGACACGATCGTGCGGCGCCGCGCATGGCTCAAAGAGCACGCCGACGAGATCCGCCGCGCGCTGATGT
TCGAGCCGCGCGGCCACGCCGACATGTACGGCGGCTATCTGACCGAGCCCGTGTCGCCGAACGCGGATTTCGGCGTGATC
TTCGTGCACAACGAAGGCTATAGCGACCATTGCGGGCACGGCGTGATCGCGCTGTCGACCGCGGCGGTCGAACTCGGCTG
GGTGCAGCGCACGGTGCCGGAAACGCGCGTCGGCATCGATGCGCCGTGCGGCTTCATCGAGGCCTTCGTCCAGTGGGACG
GCGAGCACGCGGGCCCCGTGCGTTTCGTCAACGTGCCGTCGTTCATCTGGCAGCGCGACGTGGCGGTCGATACGCCGTCG
TTCGGCACCGTGACCGGCGACATCGCGTATGGCGGCGCGTTCTATTTCTACGTCGACGGCGCGCCGTTCGATCTGCCCGT
GCGCGAATCGGCCGTCGAACGGCTGATCCGCTTCGGCGCGGAAGTGAAGGCCGCCGCGAACGCGAAGTATCCGGTCGAGC
ATCCGGAGATTCCGGAAATCAATCACATCTACGGGACGATCATCGCGAACGCACCGCGCGATCCGCGCTCGACGCAGGCG
AACTGCTGCGTGTTCGCGGACCGCGAAGTCGACCGTTCGCCGACCGGTTCCGGCACCGGCGGCCGCGTCGCGCAGCTCTA
CCAGCGCGGGCTGCTCGCGGCGGGCGACACGCTCGTCAACGAGTCGATCGTCGGCACCGTGTTCAAGGGGCGCGTGCTGC
GCGAGACGACGGTCGGCGGGATGCCGGCCGTGATACCGGAAGTGGAGGGCAGCGCGCATATCTGCGGTTTCGCGAACTGG
ATCGTCGACGAACGCGACCCGCTGACCTACGGTTTCCTCGTGCGCTGA

Upstream 100 bases:

>100_bases
CCGCAACGGCTTGCCCGAGCCCTACGCACGATAGCCGTACGCCCGTCGCCGGCGGCGCACCGCGCCGTCGTCGTTTCGCC
TTCACGTTCCCGGATCGATC

Downstream 100 bases:

>100_bases
ACGCTTGCGCCGCCGGGCGTGCGCCGCGCGGCGGGGCGTCGCGCGAGTTTTGGTACGATGCTGCCTTTCCAGCAGATCCC
CGACCCGCGTGAATCGCCGA

Product: proline racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKISRSLSTVEVHTGGEAFRIVTSGLPRLPGDTIVRRRAWLKEHADEIRRALMFEPRGHADMYGGYLTEPVSPNADFGVI
FVHNEGYSDHCGHGVIALSTAAVELGWVQRTVPETRVGIDAPCGFIEAFVQWDGEHAGPVRFVNVPSFIWQRDVAVDTPS
FGTVTGDIAYGGAFYFYVDGAPFDLPVRESAVERLIRFGAEVKAAANAKYPVEHPEIPEINHIYGTIIANAPRDPRSTQA
NCCVFADREVDRSPTGSGTGGRVAQLYQRGLLAAGDTLVNESIVGTVFKGRVLRETTVGGMPAVIPEVEGSAHICGFANW
IVDERDPLTYGFLVR

Sequences:

>Translated_335_residues
MKISRSLSTVEVHTGGEAFRIVTSGLPRLPGDTIVRRRAWLKEHADEIRRALMFEPRGHADMYGGYLTEPVSPNADFGVI
FVHNEGYSDHCGHGVIALSTAAVELGWVQRTVPETRVGIDAPCGFIEAFVQWDGEHAGPVRFVNVPSFIWQRDVAVDTPS
FGTVTGDIAYGGAFYFYVDGAPFDLPVRESAVERLIRFGAEVKAAANAKYPVEHPEIPEINHIYGTIIANAPRDPRSTQA
NCCVFADREVDRSPTGSGTGGRVAQLYQRGLLAAGDTLVNESIVGTVFKGRVLRETTVGGMPAVIPEVEGSAHICGFANW
IVDERDPLTYGFLVR
>Mature_335_residues
MKISRSLSTVEVHTGGEAFRIVTSGLPRLPGDTIVRRRAWLKEHADEIRRALMFEPRGHADMYGGYLTEPVSPNADFGVI
FVHNEGYSDHCGHGVIALSTAAVELGWVQRTVPETRVGIDAPCGFIEAFVQWDGEHAGPVRFVNVPSFIWQRDVAVDTPS
FGTVTGDIAYGGAFYFYVDGAPFDLPVRESAVERLIRFGAEVKAAANAKYPVEHPEIPEINHIYGTIIANAPRDPRSTQA
NCCVFADREVDRSPTGSGTGGRVAQLYQRGLLAAGDTLVNESIVGTVFKGRVLRETTVGGMPAVIPEVEGSAHICGFANW
IVDERDPLTYGFLVR

Specific function: Unknown

COG id: COG3938

COG function: function code E; Proline racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the proline racemase family [H]

Homologues:

Organism=Homo sapiens, GI21389361, Length=336, Percent_Identity=43.75, Blast_Score=283, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008794 [H]

Pfam domain/function: PF05544 Pro_racemase [H]

EC number: NA

Molecular weight: Translated: 36486; Mature: 36486

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISRSLSTVEVHTGGEAFRIVTSGLPRLPGDTIVRRRAWLKEHADEIRRALMFEPRGHA
CCCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DMYGGYLTEPVSPNADFGVIFVHNEGYSDHCGHGVIALSTAAVELGWVQRTVPETRVGID
HHCCCEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCHHCCCC
APCGFIEAFVQWDGEHAGPVRFVNVPSFIWQRDVAVDTPSFGTVTGDIAYGGAFYFYVDG
CCHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCEECCCCCCCEEECEEECCEEEEEECC
APFDLPVRESAVERLIRFGAEVKAAANAKYPVEHPEIPEINHIYGTIIANAPRDPRSTQA
CCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
NCCVFADREVDRSPTGSGTGGRVAQLYQRGLLAAGDTLVNESIVGTVFKGRVLRETTVGG
CEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHHHCCEEEEECCCCC
MPAVIPEVEGSAHICGFANWIVDERDPLTYGFLVR
CCEECCCCCCCEEEEEHHHHHCCCCCCCCEEEEEC
>Mature Secondary Structure
MKISRSLSTVEVHTGGEAFRIVTSGLPRLPGDTIVRRRAWLKEHADEIRRALMFEPRGHA
CCCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DMYGGYLTEPVSPNADFGVIFVHNEGYSDHCGHGVIALSTAAVELGWVQRTVPETRVGID
HHCCCEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCHHCCCC
APCGFIEAFVQWDGEHAGPVRFVNVPSFIWQRDVAVDTPSFGTVTGDIAYGGAFYFYVDG
CCHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCEECCCCCCCEEECEEECCEEEEEECC
APFDLPVRESAVERLIRFGAEVKAAANAKYPVEHPEIPEINHIYGTIIANAPRDPRSTQA
CCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
NCCVFADREVDRSPTGSGTGGRVAQLYQRGLLAAGDTLVNESIVGTVFKGRVLRETTVGG
CEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHHHCCEEEEECCCCC
MPAVIPEVEGSAHICGFANWIVDERDPLTYGFLVR
CCEECCCCCCCEEEEEHHHHHCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA