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The map label for this gene is yofA [H]

Identifier: 189352172

GI number: 189352172

Start: 204738

End: 205670

Strand: Reverse

Name: yofA [H]

Synonym: BMULJ_03390

Alternate gene names: 189352172

Gene position: 205670-204738 (Counterclockwise)

Preceding gene: 189352177

Following gene: 189352167

Centisome position: 8.32

GC content: 69.24

Gene sequence:

>933_bases
ATGAATACGCGATTTCTCGAAACCTTCGTCACGCTCGCGAAGCTGCGCAACTTCCGCACGACGGCCGCCGCGCTGCACGC
GACGCCGGCCGCGATCTCGCAACGCATCAAGGCGCTCGAGGACGAGCTGCAGACCGTGCTCGTCGATCGCGACAGCCGCG
AATTCCGGCTCACGCCGCACGGCGAGTATCTGCTCGCGTATGCGCAGGCAGTCGTCGAAGCGACGCACGAACTGCAGGCG
GCCGCGTCCGGCGAAAGCGCGCTGCGCGGCAAGCTGCGGCTCGGCGTGATCGAGACCGTCGTGCACAGCTGGCTGCCGCA
CTACCTGCGCCGACTCGCTGCCGACTATCCGCAACTCGAAGTCGATCTGACCGTCGACGTCAGCGTCGTGCTGCAACGCC
GGCTGATGGCGGGCGAACTCGATCTGATCATTCGCGTCGAGGGCAGCGACGAGCCGGCGGTGGTCTGCGATGCGCTCGCG
AACTATCCGGTGCGCTGGATCGCGCGCGCGGGGCTGCTGCCGGCCACGCGCACGGGCCTCGCGCGCCAGGTGCTGCGGCA
GCCGATCCTCACGTACGGGCGCGGGACCGCGCCGCACCGCGCGCTCGAGGACATCGTGCGCACGCTCGCGCATGCGCACG
GCGTGCCGCTGTCGGAGACGCGGATCACCGGCTCGCCGTCGATCTCGGTGATCGTGCAGCTCGTGCGCGACGGCTTCGGC
GTCGCCGCGATTCCGAGCCTGTTCGTCGATGCGCTGATCGAAAGCGGCGAAGTCGTCGAGCTGCCGCTGCAGCCGTCGCC
GCCGTCGATCGTCGTGTCGATGTCGCGGCGCGTCGATGCGCCGCGCTTCGTGCACGGTGCATCGATCGCCGCGCGTGCCG
CGTGTCACGAGTATTGCGAGAAGAGTCACCGACGGCTCGTCGAGGCGCTTTGA

Upstream 100 bases:

>100_bases
GCCGGTGTATAGAATTTCTTAACGTATCACCGGGTTTTCCCCGGTCCCGTTCAGTTTTCGTAACGGGCAAGCTTTGCGCG
CCCCGCCCCGTCCGCCGCCC

Downstream 100 bases:

>100_bases
GGCGGTGCGCGGTTGCGCCGGCTCGTGCGGCCAGCGGCGGAATCGCGCGATGCGATGCCGCGCGACGAGTCAGGCAGGTT
GCAGATCGGTTGCCGGCCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MNTRFLETFVTLAKLRNFRTTAAALHATPAAISQRIKALEDELQTVLVDRDSREFRLTPHGEYLLAYAQAVVEATHELQA
AASGESALRGKLRLGVIETVVHSWLPHYLRRLAADYPQLEVDLTVDVSVVLQRRLMAGELDLIIRVEGSDEPAVVCDALA
NYPVRWIARAGLLPATRTGLARQVLRQPILTYGRGTAPHRALEDIVRTLAHAHGVPLSETRITGSPSISVIVQLVRDGFG
VAAIPSLFVDALIESGEVVELPLQPSPPSIVVSMSRRVDAPRFVHGASIAARAACHEYCEKSHRRLVEAL

Sequences:

>Translated_310_residues
MNTRFLETFVTLAKLRNFRTTAAALHATPAAISQRIKALEDELQTVLVDRDSREFRLTPHGEYLLAYAQAVVEATHELQA
AASGESALRGKLRLGVIETVVHSWLPHYLRRLAADYPQLEVDLTVDVSVVLQRRLMAGELDLIIRVEGSDEPAVVCDALA
NYPVRWIARAGLLPATRTGLARQVLRQPILTYGRGTAPHRALEDIVRTLAHAHGVPLSETRITGSPSISVIVQLVRDGFG
VAAIPSLFVDALIESGEVVELPLQPSPPSIVVSMSRRVDAPRFVHGASIAARAACHEYCEKSHRRLVEAL
>Mature_310_residues
MNTRFLETFVTLAKLRNFRTTAAALHATPAAISQRIKALEDELQTVLVDRDSREFRLTPHGEYLLAYAQAVVEATHELQA
AASGESALRGKLRLGVIETVVHSWLPHYLRRLAADYPQLEVDLTVDVSVVLQRRLMAGELDLIIRVEGSDEPAVVCDALA
NYPVRWIARAGLLPATRTGLARQVLRQPILTYGRGTAPHRALEDIVRTLAHAHGVPLSETRITGSPSISVIVQLVRDGFG
VAAIPSLFVDALIESGEVVELPLQPSPPSIVVSMSRRVDAPRFVHGASIAARAACHEYCEKSHRRLVEAL

Specific function: Regulates expression of the cell division protein ftsW, and is essential for cell viability during stationary phase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=145, Percent_Identity=35.8620689655172, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1790208, Length=172, Percent_Identity=33.7209302325581, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790262, Length=254, Percent_Identity=28.3464566929134, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788626, Length=144, Percent_Identity=31.9444444444444, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789639, Length=282, Percent_Identity=25.886524822695, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787806, Length=265, Percent_Identity=24.1509433962264, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33969; Mature: 33969

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRFLETFVTLAKLRNFRTTAAALHATPAAISQRIKALEDELQTVLVDRDSREFRLTPH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
GEYLLAYAQAVVEATHELQAAASGESALRGKLRLGVIETVVHSWLPHYLRRLAADYPQLE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
VDLTVDVSVVLQRRLMAGELDLIIRVEGSDEPAVVCDALANYPVRWIARAGLLPATRTGL
EEEEEHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHH
ARQVLRQPILTYGRGTAPHRALEDIVRTLAHAHGVPLSETRITGSPSISVIVQLVRDGFG
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC
VAAIPSLFVDALIESGEVVELPLQPSPPSIVVSMSRRVDAPRFVHGASIAARAACHEYCE
HHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHH
KSHRRLVEAL
HHHHHHHHCC
>Mature Secondary Structure
MNTRFLETFVTLAKLRNFRTTAAALHATPAAISQRIKALEDELQTVLVDRDSREFRLTPH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
GEYLLAYAQAVVEATHELQAAASGESALRGKLRLGVIETVVHSWLPHYLRRLAADYPQLE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
VDLTVDVSVVLQRRLMAGELDLIIRVEGSDEPAVVCDALANYPVRWIARAGLLPATRTGL
EEEEEHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHH
ARQVLRQPILTYGRGTAPHRALEDIVRTLAHAHGVPLSETRITGSPSISVIVQLVRDGFG
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC
VAAIPSLFVDALIESGEVVELPLQPSPPSIVVSMSRRVDAPRFVHGASIAARAACHEYCE
HHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHH
KSHRRLVEAL
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA