Definition Orientia tsutsugamushi str. Ikeda, complete genome.
Accession NC_010793
Length 2,008,987

Click here to switch to the map view.

The map label for this gene is 189184231

Identifier: 189184231

GI number: 189184231

Start: 1344115

End: 1345500

Strand: Reverse

Name: 189184231

Synonym: OTT_1324

Alternate gene names: NA

Gene position: 1345500-1344115 (Counterclockwise)

Preceding gene: 189184232

Following gene: 189184228

Centisome position: 66.97

GC content: 25.32

Gene sequence:

>1386_bases
ATGAGAATAAAATTAGTCAATAACTCAGCATATATAAAGCAATTAGGCATTGTCATTATCATAGCTAAAATCATATATTC
TACAATATTATTTTGTGTAGAAATGCCATTTTTATCTCCTCTGTTTATTAATAAAGATATATTCAACTATGCATCTGTTG
AATGTAATCACTTGCCAATAATGTTATCCTTACTTACTAGTTGTATACTAGCAATCAATATTAGCAATTCTGTACCAAAA
CGTTATCACCTAATTAAGATATTACAATACTTAGCACTCATAGGAATTATTTGCATTATATTTCCACAGATATATAGTAC
CCAGGTAATCTTAAATAACTATATTCCCATAATAAATAACCTAATTTTTATATTAGGGCTATCTTGTTTTGGAGTAGCAA
TAATTCTTTTACATCTTGTTACGATTAACATATATAACTTAACAAGTATAACTTTAACATTAATTATTTTTATTGTTTTC
ATTAGCTTTACTTGTTCTTATTACAGCTTACAAACAATAATTATCAAATATCCAATTGATTTACCATTTTTTTACGAAGC
TATATTTTGGAGTGGTAGTAATATTATGAATGTTTTTTTTACCCAAACATTAATGGTAGCATGGGTATATTTAACACAAT
CACTATTACATATTAAGTTCAATGGCAAAATAGTTTTTATATACACAGTTTTAATACTATTAAATACAGTAGTAGCAATT
TCTGGATTATTGGGACACTTAATACATGATATGGAATCTCCATACTTTCGGGAATTCTATATTAACTACACTCAATATTT
TGTTAGTATAGCCCCAATTTTTTTTGCACTAACAGCATTGCATCAATTATTAACTATTAAATTTTATAAAAGTAACTACT
ACCATAATTTCAATAAGACAAATTTTAGCTTAGAAAATATAAACTTAACTCCCAATACAAACACAGAAAAAGATTTTCAA
ATTTTTCCGAACAGATATTGGCAACAAATCACTCCATCTTCTCAAAAGATAATATATCATGGTCTGCTATCATCGATTAT
ATTATTTATTACTGTTCATATAATAGGCTTATTAGTAAAATGTATAAATTCTATTGTTTATTATGCATCAACAATAAGCA
TTGCATTAATTTTTATGACTATCAGCTACTATATTGCTAATAACAAATACGTAATTAATAATAAACTTGCTATACTGCAA
TTATGGCTGTACTGCATTAGTTGTTTGTTAAATCTAATAGATTTTGATCATATTAATTCGACCTTAAATTTAGTAAAAAT
AATTACTAATGTAGCATGTTATAGTAAAATAATAACTATTCTAACACAAGTGTTTTTCATCATCATTATCTATAATGCTC
GCATAAATAAGTTTAGCAGCAGTTAA

Upstream 100 bases:

>100_bases
ATGACTGCATAAAAATAATTACAAGCTCTTCATCTCAATTACGCAAAGCCAAAAAAGATGCACCTACTAACTCTGATAAA
GTTGCTAAATCAAAATCTTA

Downstream 100 bases:

>100_bases
TGTATTTTTTAATAGATATGCTACTGTCATTGGCCCTACCCCACCTGGAACTGGAGTAATAAATTTTACTAAATCTTTGA
TTTTTAAAAAATCTCCATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MRIKLVNNSAYIKQLGIVIIIAKIIYSTILFCVEMPFLSPLFINKDIFNYASVECNHLPIMLSLLTSCILAINISNSVPK
RYHLIKILQYLALIGIICIIFPQIYSTQVILNNYIPIINNLIFILGLSCFGVAIILLHLVTINIYNLTSITLTLIIFIVF
ISFTCSYYSLQTIIIKYPIDLPFFYEAIFWSGSNIMNVFFTQTLMVAWVYLTQSLLHIKFNGKIVFIYTVLILLNTVVAI
SGLLGHLIHDMESPYFREFYINYTQYFVSIAPIFFALTALHQLLTIKFYKSNYYHNFNKTNFSLENINLTPNTNTEKDFQ
IFPNRYWQQITPSSQKIIYHGLLSSIILFITVHIIGLLVKCINSIVYYASTISIALIFMTISYYIANNKYVINNKLAILQ
LWLYCISCLLNLIDFDHINSTLNLVKIITNVACYSKIITILTQVFFIIIIYNARINKFSSS

Sequences:

>Translated_461_residues
MRIKLVNNSAYIKQLGIVIIIAKIIYSTILFCVEMPFLSPLFINKDIFNYASVECNHLPIMLSLLTSCILAINISNSVPK
RYHLIKILQYLALIGIICIIFPQIYSTQVILNNYIPIINNLIFILGLSCFGVAIILLHLVTINIYNLTSITLTLIIFIVF
ISFTCSYYSLQTIIIKYPIDLPFFYEAIFWSGSNIMNVFFTQTLMVAWVYLTQSLLHIKFNGKIVFIYTVLILLNTVVAI
SGLLGHLIHDMESPYFREFYINYTQYFVSIAPIFFALTALHQLLTIKFYKSNYYHNFNKTNFSLENINLTPNTNTEKDFQ
IFPNRYWQQITPSSQKIIYHGLLSSIILFITVHIIGLLVKCINSIVYYASTISIALIFMTISYYIANNKYVINNKLAILQ
LWLYCISCLLNLIDFDHINSTLNLVKIITNVACYSKIITILTQVFFIIIIYNARINKFSSS
>Mature_461_residues
MRIKLVNNSAYIKQLGIVIIIAKIIYSTILFCVEMPFLSPLFINKDIFNYASVECNHLPIMLSLLTSCILAINISNSVPK
RYHLIKILQYLALIGIICIIFPQIYSTQVILNNYIPIINNLIFILGLSCFGVAIILLHLVTINIYNLTSITLTLIIFIVF
ISFTCSYYSLQTIIIKYPIDLPFFYEAIFWSGSNIMNVFFTQTLMVAWVYLTQSLLHIKFNGKIVFIYTVLILLNTVVAI
SGLLGHLIHDMESPYFREFYINYTQYFVSIAPIFFALTALHQLLTIKFYKSNYYHNFNKTNFSLENINLTPNTNTEKDFQ
IFPNRYWQQITPSSQKIIYHGLLSSIILFITVHIIGLLVKCINSIVYYASTISIALIFMTISYYIANNKYVINNKLAILQ
LWLYCISCLLNLIDFDHINSTLNLVKIITNVACYSKIITILTQVFFIIIIYNARINKFSSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.aeolicus AQ_155 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000883 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: NA

Molecular weight: Translated: 53187; Mature: 53187

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIKLVNNSAYIKQLGIVIIIAKIIYSTILFCVEMPFLSPLFINKDIFNYASVECNHLPI
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCCCCCHHH
MLSLLTSCILAINISNSVPKRYHLIKILQYLALIGIICIIFPQIYSTQVILNNYIPIINN
HHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LIFILGLSCFGVAIILLHLVTINIYNLTSITLTLIIFIVFISFTCSYYSLQTIIIKYPID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCC
LPFFYEAIFWSGSNIMNVFFTQTLMVAWVYLTQSLLHIKFNGKIVFIYTVLILLNTVVAI
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEHHHHHHHHHHHHHHH
SGLLGHLIHDMESPYFREFYINYTQYFVSIAPIFFALTALHQLLTIKFYKSNYYHNFNKT
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC
NFSLENINLTPNTNTEKDFQIFPNRYWQQITPSSQKIIYHGLLSSIILFITVHIIGLLVK
CEEEEEEEECCCCCCCCCCEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CINSIVYYASTISIALIFMTISYYIANNKYVINNKLAILQLWLYCISCLLNLIDFDHINS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
TLNLVKIITNVACYSKIITILTQVFFIIIIYNARINKFSSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRIKLVNNSAYIKQLGIVIIIAKIIYSTILFCVEMPFLSPLFINKDIFNYASVECNHLPI
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCCCCCHHH
MLSLLTSCILAINISNSVPKRYHLIKILQYLALIGIICIIFPQIYSTQVILNNYIPIINN
HHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LIFILGLSCFGVAIILLHLVTINIYNLTSITLTLIIFIVFISFTCSYYSLQTIIIKYPID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCC
LPFFYEAIFWSGSNIMNVFFTQTLMVAWVYLTQSLLHIKFNGKIVFIYTVLILLNTVVAI
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEHHHHHHHHHHHHHHH
SGLLGHLIHDMESPYFREFYINYTQYFVSIAPIFFALTALHQLLTIKFYKSNYYHNFNKT
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC
NFSLENINLTPNTNTEKDFQIFPNRYWQQITPSSQKIIYHGLLSSIILFITVHIIGLLVK
CEEEEEEEECCCCCCCCCCEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CINSIVYYASTISIALIFMTISYYIANNKYVINNKLAILQLWLYCISCLLNLIDFDHINS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
TLNLVKIITNVACYSKIITILTQVFFIIIIYNARINKFSSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]