| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189184228
Identifier: 189184228
GI number: 189184228
Start: 1339280
End: 1342063
Strand: Reverse
Name: 189184228
Synonym: OTT_1321
Alternate gene names: NA
Gene position: 1342063-1339280 (Counterclockwise)
Preceding gene: 189184231
Following gene: 189184223
Centisome position: 66.8
GC content: 30.89
Gene sequence:
>2784_bases ATGTTAATAAAATCATTAGGTAGTCTTGGAGGATATATTGGTAAATCTTTAGGTGGAGGTATGTTATCAACTATTGGGCG TTTTACTGGAAGAACCATTGGCAATTATTTAGAATCTGAAAAAGTACATCAAAACCATGAAGAACATAACAAAAAGGTTT TTGAATATTATCACATTGGCAAACAAATCCATTCACTACAAACAGCGCCAGAAGCATACGGAGACTATATTCCATTAATT TTTGGCACTGTAAAACTTCACGGTACCATTATCTGGATAGGGAATTTTAACATCAAAAAAGAAGCTACTAGTATTACTAA GCAAAGTTCAACTCACAATTATGAGCATAACATAAATTATGTTTCGATAGGTTTTGCATTATGTGAAGGACCAATTACTA AAATTGGCAAAATTTGGCATAACAACCAAGTAATTAACGATTTAGGCTATGAATATACTCTTTATTATGGCACAGAAACT CAAGAACCTGATCCATTAATTACAGCTGCACAAAACAATAGTAATTGTACTCCGGCTTTTCGAGGATTAGCATATATAGT ATTTAAGAATATTAACCTTAATGATTTCAACAATAAAATACCAATCTTTTCGTTTGAAGTTACAAGAAATCCTAATATTA CCTTAGATTGTCATACTACGTTACAAAATGCAAATAGCTATAATACTGCAGATATGATTCAATCAATTGTAATAATACCT GGTAGTGGAGAGTTTACCTTGGATACTCAAATACAATACAAGTATAATTCTAATAGCAAATCCACTTCAGTAGCAGTTAA TTGTCATAATAACTTTAACTTAGCAAACAGTGTTGTCAGCCTTAATCAATTACTAAATACTTGTAATAACATTAAATGGA CAGCACCAGTAGTTTGCTGGTTCGGAACAAATTTAGATGCTAACAAATGCAAAATTATACCAAAAGTGGAATATCATAAT TATGGCCCAAACTGGCAAGTTGCAGATTATATACGTGACAATGCTCAACTAGTAAGCAGAGATCTTACAGGAAACTTAAA ATATGGTGGTTCAATTGATGACCAAAGCTTACTACGATATTTAGCGTTACTTAAAAATAAAAAGCTAAAGATAATGCTCT ACCCTATTATTATGATGGACACCAATGGTAAACCATGGCGAGGTAATATTCATGTTCCACAATATAGTGCCTCTGCTTTG AATTTAGATAATATCATTGCTACTTTCTTTCGAGGTGGTAAAGAATATACAGCAATTAATCCTAAAAAAGGATCATATAA CTATTTTATTTTACATTATGCCAATCTAGCTGCAGGAAAAGTAGATGCTTTTATCATTGGTTCTGAATTAAAAAAACTAA CCTCTACGTATAATAGATTTAGCAACAACGCAGTAGAAAAATTTCCAGCTGTATCAGAACTAATTGAGCTAGCCAAAGCA GTTAAATCAATATTAGGCAAGCAAGTATTAGTCAGTTATGCAGCAGATTGGAGCGAATATCACCATATTGATACCAATGA TGGTTATTATTATCATCTAGACCCTTTGTGGGCATGTGATACAATAGATTTTGTTGGCATTGATGCCTATTTCCCTCTAA CTCATACTCAAGACTCTAACATTACTATTGAAGAAATTAAACACGGATGGGAATCAGGAGAAGGATACGATTATTACTTT GACAATAATCAGCTTAAACAATTTAATAACATAGATTTAGCATGGAAAAACATAAAACATTGGTGGAGTAAATACCATAC TAATTCTGATGGAAAACAAACGATGTGGATTCCTAAAATGAAACCAATCTGGTTCACGGAATTTGGAGTTCCTTCCGTAG ATAAAGCAACAAATCAACCTAACATTTTTTTTGCTCCAGATTCAAAAGATCAGCAATATCCTAAATACTCTACTGGAGCA GTAGACTTCTTAATTCAAAGTAAAGCAATTAAAGCTAGTTTAGAATATTGGCAACAATATTCTAATATGGTAGAAAACAT ATTTTTATGGGCTTGGGATGCTAGACCTTACCCAATTTGGCCAACAAATCCATATTGGAAAGATAGAGAACTATGGCCAA CTGGTCATTGGATTAATGGAAAACTTACCAGTATAAACCTAGCAGCAATGATACTAGAGTTATGTACTAAGAGCGGGATT GACTCTAGTAAAGTTGATGTTACTTCAATTGATGATGAAGTAGCTGGATTACTTATTACAAAAAATCATAAAACGATTGA TGTGATAAATATGCTACGGTGTTGTTATTTTTTTGATATAAAAACTAGCGCAATAAATAAAATTAGTTTTATGAAACGTA ATCACAAAACTAATTTACATCTGTCAGCTAGACAATGTATTATAGAATCAAATCAAGCTTCAGTAAATCATACAATTATA GCTAAAAATCAAATCTTAAATAATATCAACCTTAAATTTATCGATTCCAATAATAGTTATTGCATTGCAAGCTTTAATTA CACTTTAGAACAAGAAAATTATAGTCAACAATATAATCTAAACTTACCAATAGTAACTTCTCTACAGAATGTACAAAATA TCTGCCAAACTATACTTAAAAATGCTAATGCTGAAAATATATTATTTAGCTTTATACTACCTATTAGCTATGCATATCTT GAAGTATCTGATATCATCACTCTAATCATTGAAGATATGAAATTTATTATTAGAATCACGAATATTAAATATTCTCAATT AATAATAATAATTGCAGCAGTAACAAGTAATATAGTCAGTACTGCTGCAAAAACATCAAAATAA
Upstream 100 bases:
>100_bases TTTATTACCTATTAATACAAACTTATTCGACCGTTAGCCTAGCATGTTTTTAATATATCTTCAATATGTAATAATGTTCA ATTAAATAGAAAAGAAATAA
Downstream 100 bases:
>100_bases TTATTTTAAAAACATAGCATAGGCTTTGCATATGCTGCATTCAAGCAATTAAATACTAAAAAATAGAAGTTATAGTAAAT ACTATAACTTCTGGAATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: Gene Transfer Agent Like Protein; Gene Transfer Agent Orfg; Phage Hocificity Protein; Gene Transfer Agent Protein; Gene Transfer Agent-Like Protein; Gene Transfer Agent Product
Number of amino acids: Translated: 927; Mature: 927
Protein sequence:
>927_residues MLIKSLGSLGGYIGKSLGGGMLSTIGRFTGRTIGNYLESEKVHQNHEEHNKKVFEYYHIGKQIHSLQTAPEAYGDYIPLI FGTVKLHGTIIWIGNFNIKKEATSITKQSSTHNYEHNINYVSIGFALCEGPITKIGKIWHNNQVINDLGYEYTLYYGTET QEPDPLITAAQNNSNCTPAFRGLAYIVFKNINLNDFNNKIPIFSFEVTRNPNITLDCHTTLQNANSYNTADMIQSIVIIP GSGEFTLDTQIQYKYNSNSKSTSVAVNCHNNFNLANSVVSLNQLLNTCNNIKWTAPVVCWFGTNLDANKCKIIPKVEYHN YGPNWQVADYIRDNAQLVSRDLTGNLKYGGSIDDQSLLRYLALLKNKKLKIMLYPIIMMDTNGKPWRGNIHVPQYSASAL NLDNIIATFFRGGKEYTAINPKKGSYNYFILHYANLAAGKVDAFIIGSELKKLTSTYNRFSNNAVEKFPAVSELIELAKA VKSILGKQVLVSYAADWSEYHHIDTNDGYYYHLDPLWACDTIDFVGIDAYFPLTHTQDSNITIEEIKHGWESGEGYDYYF DNNQLKQFNNIDLAWKNIKHWWSKYHTNSDGKQTMWIPKMKPIWFTEFGVPSVDKATNQPNIFFAPDSKDQQYPKYSTGA VDFLIQSKAIKASLEYWQQYSNMVENIFLWAWDARPYPIWPTNPYWKDRELWPTGHWINGKLTSINLAAMILELCTKSGI DSSKVDVTSIDDEVAGLLITKNHKTIDVINMLRCCYFFDIKTSAINKISFMKRNHKTNLHLSARQCIIESNQASVNHTII AKNQILNNINLKFIDSNNSYCIASFNYTLEQENYSQQYNLNLPIVTSLQNVQNICQTILKNANAENILFSFILPISYAYL EVSDIITLIIEDMKFIIRITNIKYSQLIIIIAAVTSNIVSTAAKTSK
Sequences:
>Translated_927_residues MLIKSLGSLGGYIGKSLGGGMLSTIGRFTGRTIGNYLESEKVHQNHEEHNKKVFEYYHIGKQIHSLQTAPEAYGDYIPLI FGTVKLHGTIIWIGNFNIKKEATSITKQSSTHNYEHNINYVSIGFALCEGPITKIGKIWHNNQVINDLGYEYTLYYGTET QEPDPLITAAQNNSNCTPAFRGLAYIVFKNINLNDFNNKIPIFSFEVTRNPNITLDCHTTLQNANSYNTADMIQSIVIIP GSGEFTLDTQIQYKYNSNSKSTSVAVNCHNNFNLANSVVSLNQLLNTCNNIKWTAPVVCWFGTNLDANKCKIIPKVEYHN YGPNWQVADYIRDNAQLVSRDLTGNLKYGGSIDDQSLLRYLALLKNKKLKIMLYPIIMMDTNGKPWRGNIHVPQYSASAL NLDNIIATFFRGGKEYTAINPKKGSYNYFILHYANLAAGKVDAFIIGSELKKLTSTYNRFSNNAVEKFPAVSELIELAKA VKSILGKQVLVSYAADWSEYHHIDTNDGYYYHLDPLWACDTIDFVGIDAYFPLTHTQDSNITIEEIKHGWESGEGYDYYF DNNQLKQFNNIDLAWKNIKHWWSKYHTNSDGKQTMWIPKMKPIWFTEFGVPSVDKATNQPNIFFAPDSKDQQYPKYSTGA VDFLIQSKAIKASLEYWQQYSNMVENIFLWAWDARPYPIWPTNPYWKDRELWPTGHWINGKLTSINLAAMILELCTKSGI DSSKVDVTSIDDEVAGLLITKNHKTIDVINMLRCCYFFDIKTSAINKISFMKRNHKTNLHLSARQCIIESNQASVNHTII AKNQILNNINLKFIDSNNSYCIASFNYTLEQENYSQQYNLNLPIVTSLQNVQNICQTILKNANAENILFSFILPISYAYL EVSDIITLIIEDMKFIIRITNIKYSQLIIIIAAVTSNIVSTAAKTSK >Mature_927_residues MLIKSLGSLGGYIGKSLGGGMLSTIGRFTGRTIGNYLESEKVHQNHEEHNKKVFEYYHIGKQIHSLQTAPEAYGDYIPLI FGTVKLHGTIIWIGNFNIKKEATSITKQSSTHNYEHNINYVSIGFALCEGPITKIGKIWHNNQVINDLGYEYTLYYGTET QEPDPLITAAQNNSNCTPAFRGLAYIVFKNINLNDFNNKIPIFSFEVTRNPNITLDCHTTLQNANSYNTADMIQSIVIIP GSGEFTLDTQIQYKYNSNSKSTSVAVNCHNNFNLANSVVSLNQLLNTCNNIKWTAPVVCWFGTNLDANKCKIIPKVEYHN YGPNWQVADYIRDNAQLVSRDLTGNLKYGGSIDDQSLLRYLALLKNKKLKIMLYPIIMMDTNGKPWRGNIHVPQYSASAL NLDNIIATFFRGGKEYTAINPKKGSYNYFILHYANLAAGKVDAFIIGSELKKLTSTYNRFSNNAVEKFPAVSELIELAKA VKSILGKQVLVSYAADWSEYHHIDTNDGYYYHLDPLWACDTIDFVGIDAYFPLTHTQDSNITIEEIKHGWESGEGYDYYF DNNQLKQFNNIDLAWKNIKHWWSKYHTNSDGKQTMWIPKMKPIWFTEFGVPSVDKATNQPNIFFAPDSKDQQYPKYSTGA VDFLIQSKAIKASLEYWQQYSNMVENIFLWAWDARPYPIWPTNPYWKDRELWPTGHWINGKLTSINLAAMILELCTKSGI DSSKVDVTSIDDEVAGLLITKNHKTIDVINMLRCCYFFDIKTSAINKISFMKRNHKTNLHLSARQCIIESNQASVNHTII AKNQILNNINLKFIDSNNSYCIASFNYTLEQENYSQQYNLNLPIVTSLQNVQNICQTILKNANAENILFSFILPISYAYL EVSDIITLIIEDMKFIIRITNIKYSQLIIIIAAVTSNIVSTAAKTSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105467; Mature: 105467
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIKSLGSLGGYIGKSLGGGMLSTIGRFTGRTIGNYLESEKVHQNHEEHNKKVFEYYHIG CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH KQIHSLQTAPEAYGDYIPLIFGTVKLHGTIIWIGNFNIKKEATSITKQSSTHNYEHNINY HHHHHHHCCHHHHCCEEEEEEEEEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCE VSIGFALCEGPITKIGKIWHNNQVINDLGYEYTLYYGTETQEPDPLITAAQNNSNCTPAF EEEEEEECCCCHHHHHHHHCCCEEHHHCCCEEEEEECCCCCCCCCEEEEECCCCCCCHHH RGLAYIVFKNINLNDFNNKIPIFSFEVTRNPNITLDCHTTLQNANSYNTADMIQSIVIIP HCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEHHHCCCCCCCHHHHHCEEEEEE GSGEFTLDTQIQYKYNSNSKSTSVAVNCHNNFNLANSVVSLNQLLNTCNNIKWTAPVVCW CCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEECCCEEEE FGTNLDANKCKIIPKVEYHNYGPNWQVADYIRDNAQLVSRDLTGNLKYGGSIDDQSLLRY ECCCCCCCCEEEEEEEEECCCCCCCEEHHHHHCCHHHHHHCCCCCEECCCCCCHHHHHHH LALLKNKKLKIMLYPIIMMDTNGKPWRGNIHVPQYSASALNLDNIIATFFRGGKEYTAIN HHHHCCCCEEEEEEEEEEECCCCCCEECCEECCCCCCCCCCHHHHHHHHHCCCCEEEEEC PKKGSYNYFILHYANLAAGKVDAFIIGSELKKLTSTYNRFSNNAVEKFPAVSELIELAKA CCCCCCCEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHH VKSILGKQVLVSYAADWSEYHHIDTNDGYYYHLDPLWACDTIDFVGIDAYFPLTHTQDSN HHHHHHHHHHHHHHHCHHHHCEEECCCCEEEECCCEEEECCEEEEEECEEECEECCCCCC ITIEEIKHGWESGEGYDYYFDNNQLKQFNNIDLAWKNIKHWWSKYHTNSDGKQTMWIPKM EEHHHHHCCCCCCCCEEEEECCCCHHHCCCCCEEHHHHHHHHHHHCCCCCCCEEEEECCC KPIWFTEFGVPSVDKATNQPNIFFAPDSKDQQYPKYSTGAVDFLIQSKAIKASLEYWQQY CCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHEEEEHHHHHHHHHHHHHHH SNMVENIFLWAWDARPYPIWPTNPYWKDRELWPTGHWINGKLTSINLAAMILELCTKSGI HHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEHHHHHHHHHHHHHCCC DSSKVDVTSIDDEVAGLLITKNHKTIDVINMLRCCYFFDIKTSAINKISFMKRNHKTNLH CCCCEEEEECCCCCEEEEEECCCCEEHHHHHHHHHHEEEECHHHHHHHHHHHCCCCCEEE LSARQCIIESNQASVNHTIIAKNQILNNINLKFIDSNNSYCIASFNYTLEQENYSQQYNL EEHHHHEEECCCCCCCEEEEEHHHHHCCCEEEEEECCCCEEEEEEEEEEECCCCCCEEEC NLPIVTSLQNVQNICQTILKNANAENILFSFILPISYAYLEVSDIITLIIEDMKFIIRIT CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE NIKYSQLIIIIAAVTSNIVSTAAKTSK CCCHHHHEEEHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLIKSLGSLGGYIGKSLGGGMLSTIGRFTGRTIGNYLESEKVHQNHEEHNKKVFEYYHIG CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH KQIHSLQTAPEAYGDYIPLIFGTVKLHGTIIWIGNFNIKKEATSITKQSSTHNYEHNINY HHHHHHHCCHHHHCCEEEEEEEEEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCE VSIGFALCEGPITKIGKIWHNNQVINDLGYEYTLYYGTETQEPDPLITAAQNNSNCTPAF EEEEEEECCCCHHHHHHHHCCCEEHHHCCCEEEEEECCCCCCCCCEEEEECCCCCCCHHH RGLAYIVFKNINLNDFNNKIPIFSFEVTRNPNITLDCHTTLQNANSYNTADMIQSIVIIP HCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEHHHCCCCCCCHHHHHCEEEEEE GSGEFTLDTQIQYKYNSNSKSTSVAVNCHNNFNLANSVVSLNQLLNTCNNIKWTAPVVCW CCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEECCCEEEE FGTNLDANKCKIIPKVEYHNYGPNWQVADYIRDNAQLVSRDLTGNLKYGGSIDDQSLLRY ECCCCCCCCEEEEEEEEECCCCCCCEEHHHHHCCHHHHHHCCCCCEECCCCCCHHHHHHH LALLKNKKLKIMLYPIIMMDTNGKPWRGNIHVPQYSASALNLDNIIATFFRGGKEYTAIN HHHHCCCCEEEEEEEEEEECCCCCCEECCEECCCCCCCCCCHHHHHHHHHCCCCEEEEEC PKKGSYNYFILHYANLAAGKVDAFIIGSELKKLTSTYNRFSNNAVEKFPAVSELIELAKA CCCCCCCEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHH VKSILGKQVLVSYAADWSEYHHIDTNDGYYYHLDPLWACDTIDFVGIDAYFPLTHTQDSN HHHHHHHHHHHHHHHCHHHHCEEECCCCEEEECCCEEEECCEEEEEECEEECEECCCCCC ITIEEIKHGWESGEGYDYYFDNNQLKQFNNIDLAWKNIKHWWSKYHTNSDGKQTMWIPKM EEHHHHHCCCCCCCCEEEEECCCCHHHCCCCCEEHHHHHHHHHHHCCCCCCCEEEEECCC KPIWFTEFGVPSVDKATNQPNIFFAPDSKDQQYPKYSTGAVDFLIQSKAIKASLEYWQQY CCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHEEEEHHHHHHHHHHHHHHH SNMVENIFLWAWDARPYPIWPTNPYWKDRELWPTGHWINGKLTSINLAAMILELCTKSGI HHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEHHHHHHHHHHHHHCCC DSSKVDVTSIDDEVAGLLITKNHKTIDVINMLRCCYFFDIKTSAINKISFMKRNHKTNLH CCCCEEEEECCCCCEEEEEECCCCEEHHHHHHHHHHEEEECHHHHHHHHHHHCCCCCEEE LSARQCIIESNQASVNHTIIAKNQILNNINLKFIDSNNSYCIASFNYTLEQENYSQQYNL EEHHHHEEECCCCCCCEEEEEHHHHHCCCEEEEEECCCCEEEEEEEEEEECCCCCCEEEC NLPIVTSLQNVQNICQTILKNANAENILFSFILPISYAYLEVSDIITLIIEDMKFIIRIT CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE NIKYSQLIIIIAAVTSNIVSTAAKTSK CCCHHHHEEEHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA