| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is sca1 [H]
Identifier: 189183741
GI number: 189183741
Start: 877294
End: 880146
Strand: Reverse
Name: sca1 [H]
Synonym: OTT_0834
Alternate gene names: 189183741
Gene position: 880146-877294 (Counterclockwise)
Preceding gene: 189183742
Following gene: 189183740
Centisome position: 43.81
GC content: 35.93
Gene sequence:
>2853_bases ATGGCTCCAGACAATAAACCAATTAACAACAAATCTTCAGGCTTAATATCAAAATCACAAGAGCAAAATATTAAAGATCT TGGCAAGAAAATAGATTTAATGATACAACAAGTTGATACTCTTGATAGTAAAATGCGATCAAGGTCAGCAGAATGCAATA CACTAAATGTTAAAGTAATTAGAGCATTAAATAATGTAATGAAGAGTGTGCCAGAGACGCTACAACAATTCTCGCAAGAA ATACTTCATCAGTCTAAACTAGCACGTCAACAACCTCAAAAAGGTCAATATAATGATGCCTTTCGTAAGAAAAGAGCTGA GGCTAAAGAAAAAAAAGAACACCTTGAAAAGCAAAAGCAAGAATTCATGGGGTTAGTATCTAAATTAGGCGAGGAAATGA AGCTAGTAGGCAAACCAGGTGGACAGATGTCTGAGATAAAAGATACTCTAGATAAGCTTCATGCAATAGTTAACAAGTCA GCACAGCATCAACTGCAAAATACTCTTGGTGAGCTTCAGGCAATGATTAATGAACATAAACAGAACCAGCTACAAGATGC TCTAGATGATCTGGAAAATATAATCAACGATCATAAACAGAATCAAAAAGAACAGAAGGCTCCTATTTCACCTGAAACAC ATGCACATGATGTAACGTCTATTAAAAATCAAGCTCAACAAAATGCTGGTATCAATCAACCAGATGCACCTAAATCTGCT AGCAAATCAGCAGCAGATATATCACAATCTCCTCAGCGTTCTTCTCCAGCAACGCCAACTGGCACAGGGCAACAACATGA ACAAAAAAAAACACCTCCTCCTGTTCCACCTAAACCTAGTAAAAATACAATGGAAGCTATAAATGCTAAAATAGCTCAAG CTCAACAAAATGCTGGTATTAATCAACCAGATGCACCTAAATCTGCTAGCAAATCAGCAGCAGATATACCACAATCTCCT CAGCATTCTTCTCCAGTAACACCAACTGCTACAGTGCAACAACACGAGCCACAAAAAACGCCTCCTCCTGTTCCACCTAA ACCTGGTAAAGATACAATAGAGGAATTAAAGGCTAAAATAGCTCAAGCTCAACAAAATGCTGGTATTAATCAACCAGATG CATCTAAATCTGCTAGCAAATCAGCAGCAGATATATCACAATCTACTCAGCATTCTTCTCCAGTAACACCAACTGCTACA GCACAACAACAAGAGCCACAAAAAACACCTCCTCCTGTTCCACCTAAACCTAGTAAAAATATAATCGAAGAATTAAAAGC TAAGATATCACAAACTCAACAACAGGTTGACCGGCAATCATATATTAATCCAAGTAGTAGTCCCCAACCTCTTAGTTCAA CTATAGAGCATGCTAAAGACAGAGTATTAACATTAGATCTACAATATAGACATGCTCAAGCTGCTCAAAATATGAGTGGA CCAGATGCTGAAACAAATCAGATGCCAGTAGATCAAATTCTACAAGCATTTAAAGATTTAAAAGCACTTATAAATAGTGT GATTGCTGAAGATGATAAGTTTAAAGTATGGCAACAGCAAAATCAAAGCAAAAGCCTAGATGATTTTAAACGTGATACAA CACAAATGGATAGCTTATCTCAAGAGACTAAAGAGTTACTATCTAGCATCGGATCTGCAGGATGTGCTAACATTATGGGC TCAACAGCAAATATTGAACAAGCTCAGCAAATGTCATTTGCTGCATCTTTTAGTACATTAGATTGGGCTACTCATGCTAA TTCTGTTGGCAATACTACTCAAAAAACTATTACCAATGATGCTGGTGAAAAAGTTACAGACCTTATAAGCCATAGCCATA AAACTCAGCTCAGTGCTAGTGTTAATGGTGTTACAAAAACTGTTACTAAACACCGTACCATAGATATTCCAAGGGCAGTT GAAGAAAACAAAGGACCTTTAGATCTTGCTTTAGTAGCACAAGATGAAACTGGAAAAAATATGTCTGAGTCAAAAGCAGT GTATCTAACTGCTCATTATAACCAAGAAGGAAAATTAGTAGAAATGACTCATCCTGAACCTCTGAGATTCTTTAGTGATG AGCCTGGCTCTCCAGCTTATACAGTTATAAATAATGAAGTTTATACTTTGCCAATTACTAAAGAAAAATATGACCAGCTA ACCAAAGAAATATCACAAAATATACAGGAACAAGACAAAGATAAAGAGAGAGAACAGGAAGCTGTGGATAAGTTTACAGT TGGTTCTCGTCAAACTGATATTCATAAAGAAAAAAGTATTCAACAGGCTGATGAAGTAAGTAACGATGATCCTAAATCCT TAAAGTCTATGAATGAGTTTACAATAGGCTCTCATCAAACTAGTGATATCTATAACGAGAAAAGTACTCGAAATCCTGAA GAAATAAGTAGCGATGCTCCTAAATCTTTAAAGTCTATTGCTCCTGATGAAAACAAAACCCAAATTCAAAGCAAAACTGA TCATAAATTGCAAAACAGCAATGAATATGTTCAACATATGATTAACTCGTTTAATCAAAACTATAACAAAATTGATTCTA ACGAGCAAAATCGTACTGAAGAGGTAAAACTGAAGCCTGTAGTCAAATCAATACCAGAATCACCAAAAAACTCTACTCAG ATCGATCCTAATGAGGAAGGTAGGAGTGGATATGTAAAACGTGTGGTTGAATCAATGGAACAAACATTACAAAATCATAG TGAGATAGCACAAAGATTACAGGTAAATCTAGCTAATAGTTCTCAGCATAGTTCTAGTACATCTATTACTACTCCTACTA ATACTCCTCGCAATAATAACAAAAGCAAATCTCAGACAAAAGGTATAGGGTAG
Upstream 100 bases:
>100_bases GAGGAAAATTGTATAAAAAATGTTTTAGAACCCAAATTAAATTGAGGTACACTAAAATTATATTACAATATTACATAACA AAACATTTAAAGTAATTATT
Downstream 100 bases:
>100_bases ATAAATTAAGAAAAAAGCTCTTGAAAATAGGTTGTATAAAGAAAAATTTTAATACAACCTATATTTAGTCTGATAACAAA GAAATGTTGCCATACCCCAT
Product: cell surface antigen
Products: NA
Alternate protein names: 120 kDa antigen; Protein PS 120; PS120 [H]
Number of amino acids: Translated: 950; Mature: 949
Protein sequence:
>950_residues MAPDNKPINNKSSGLISKSQEQNIKDLGKKIDLMIQQVDTLDSKMRSRSAECNTLNVKVIRALNNVMKSVPETLQQFSQE ILHQSKLARQQPQKGQYNDAFRKKRAEAKEKKEHLEKQKQEFMGLVSKLGEEMKLVGKPGGQMSEIKDTLDKLHAIVNKS AQHQLQNTLGELQAMINEHKQNQLQDALDDLENIINDHKQNQKEQKAPISPETHAHDVTSIKNQAQQNAGINQPDAPKSA SKSAADISQSPQRSSPATPTGTGQQHEQKKTPPPVPPKPSKNTMEAINAKIAQAQQNAGINQPDAPKSASKSAADIPQSP QHSSPVTPTATVQQHEPQKTPPPVPPKPGKDTIEELKAKIAQAQQNAGINQPDASKSASKSAADISQSTQHSSPVTPTAT AQQQEPQKTPPPVPPKPSKNIIEELKAKISQTQQQVDRQSYINPSSSPQPLSSTIEHAKDRVLTLDLQYRHAQAAQNMSG PDAETNQMPVDQILQAFKDLKALINSVIAEDDKFKVWQQQNQSKSLDDFKRDTTQMDSLSQETKELLSSIGSAGCANIMG STANIEQAQQMSFAASFSTLDWATHANSVGNTTQKTITNDAGEKVTDLISHSHKTQLSASVNGVTKTVTKHRTIDIPRAV EENKGPLDLALVAQDETGKNMSESKAVYLTAHYNQEGKLVEMTHPEPLRFFSDEPGSPAYTVINNEVYTLPITKEKYDQL TKEISQNIQEQDKDKEREQEAVDKFTVGSRQTDIHKEKSIQQADEVSNDDPKSLKSMNEFTIGSHQTSDIYNEKSTRNPE EISSDAPKSLKSIAPDENKTQIQSKTDHKLQNSNEYVQHMINSFNQNYNKIDSNEQNRTEEVKLKPVVKSIPESPKNSTQ IDPNEEGRSGYVKRVVESMEQTLQNHSEIAQRLQVNLANSSQHSSSTSITTPTNTPRNNNKSKSQTKGIG
Sequences:
>Translated_950_residues MAPDNKPINNKSSGLISKSQEQNIKDLGKKIDLMIQQVDTLDSKMRSRSAECNTLNVKVIRALNNVMKSVPETLQQFSQE ILHQSKLARQQPQKGQYNDAFRKKRAEAKEKKEHLEKQKQEFMGLVSKLGEEMKLVGKPGGQMSEIKDTLDKLHAIVNKS AQHQLQNTLGELQAMINEHKQNQLQDALDDLENIINDHKQNQKEQKAPISPETHAHDVTSIKNQAQQNAGINQPDAPKSA SKSAADISQSPQRSSPATPTGTGQQHEQKKTPPPVPPKPSKNTMEAINAKIAQAQQNAGINQPDAPKSASKSAADIPQSP QHSSPVTPTATVQQHEPQKTPPPVPPKPGKDTIEELKAKIAQAQQNAGINQPDASKSASKSAADISQSTQHSSPVTPTAT AQQQEPQKTPPPVPPKPSKNIIEELKAKISQTQQQVDRQSYINPSSSPQPLSSTIEHAKDRVLTLDLQYRHAQAAQNMSG PDAETNQMPVDQILQAFKDLKALINSVIAEDDKFKVWQQQNQSKSLDDFKRDTTQMDSLSQETKELLSSIGSAGCANIMG STANIEQAQQMSFAASFSTLDWATHANSVGNTTQKTITNDAGEKVTDLISHSHKTQLSASVNGVTKTVTKHRTIDIPRAV EENKGPLDLALVAQDETGKNMSESKAVYLTAHYNQEGKLVEMTHPEPLRFFSDEPGSPAYTVINNEVYTLPITKEKYDQL TKEISQNIQEQDKDKEREQEAVDKFTVGSRQTDIHKEKSIQQADEVSNDDPKSLKSMNEFTIGSHQTSDIYNEKSTRNPE EISSDAPKSLKSIAPDENKTQIQSKTDHKLQNSNEYVQHMINSFNQNYNKIDSNEQNRTEEVKLKPVVKSIPESPKNSTQ IDPNEEGRSGYVKRVVESMEQTLQNHSEIAQRLQVNLANSSQHSSSTSITTPTNTPRNNNKSKSQTKGIG >Mature_949_residues APDNKPINNKSSGLISKSQEQNIKDLGKKIDLMIQQVDTLDSKMRSRSAECNTLNVKVIRALNNVMKSVPETLQQFSQEI LHQSKLARQQPQKGQYNDAFRKKRAEAKEKKEHLEKQKQEFMGLVSKLGEEMKLVGKPGGQMSEIKDTLDKLHAIVNKSA QHQLQNTLGELQAMINEHKQNQLQDALDDLENIINDHKQNQKEQKAPISPETHAHDVTSIKNQAQQNAGINQPDAPKSAS KSAADISQSPQRSSPATPTGTGQQHEQKKTPPPVPPKPSKNTMEAINAKIAQAQQNAGINQPDAPKSASKSAADIPQSPQ HSSPVTPTATVQQHEPQKTPPPVPPKPGKDTIEELKAKIAQAQQNAGINQPDASKSASKSAADISQSTQHSSPVTPTATA QQQEPQKTPPPVPPKPSKNIIEELKAKISQTQQQVDRQSYINPSSSPQPLSSTIEHAKDRVLTLDLQYRHAQAAQNMSGP DAETNQMPVDQILQAFKDLKALINSVIAEDDKFKVWQQQNQSKSLDDFKRDTTQMDSLSQETKELLSSIGSAGCANIMGS TANIEQAQQMSFAASFSTLDWATHANSVGNTTQKTITNDAGEKVTDLISHSHKTQLSASVNGVTKTVTKHRTIDIPRAVE ENKGPLDLALVAQDETGKNMSESKAVYLTAHYNQEGKLVEMTHPEPLRFFSDEPGSPAYTVINNEVYTLPITKEKYDQLT KEISQNIQEQDKDKEREQEAVDKFTVGSRQTDIHKEKSIQQADEVSNDDPKSLKSMNEFTIGSHQTSDIYNEKSTRNPEE ISSDAPKSLKSIAPDENKTQIQSKTDHKLQNSNEYVQHMINSFNQNYNKIDSNEQNRTEEVKLKPVVKSIPESPKNSTQI DPNEEGRSGYVKRVVESMEQTLQNHSEIAQRLQVNLANSSQHSSSTSITTPTNTPRNNNKSKSQTKGIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020954 [H]
Pfam domain/function: PF12574 120_Rick_ant [H]
EC number: NA
Molecular weight: Translated: 104942; Mature: 104811
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPDNKPINNKSSGLISKSQEQNIKDLGKKIDLMIQQVDTLDSKMRSRSAECNTLNVKVI CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH RALNNVMKSVPETLQQFSQEILHQSKLARQQPQKGQYNDAFRKKRAEAKEKKEHLEKQKQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH EFMGLVSKLGEEMKLVGKPGGQMSEIKDTLDKLHAIVNKSAQHQLQNTLGELQAMINEHK HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QNQLQDALDDLENIINDHKQNQKEQKAPISPETHAHDVTSIKNQAQQNAGINQPDAPKSA HHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH SKSAADISQSPQRSSPATPTGTGQQHEQKKTPPPVPPKPSKNTMEAINAKIAQAQQNAGI CHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC NQPDAPKSASKSAADIPQSPQHSSPVTPTATVQQHEPQKTPPPVPPKPGKDTIEELKAKI CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHH AQAQQNAGINQPDASKSASKSAADISQSTQHSSPVTPTATAQQQEPQKTPPPVPPKPSKN HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH IIEELKAKISQTQQQVDRQSYINPSSSPQPLSSTIEHAKDRVLTLDLQYRHAQAAQNMSG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHHHHHCCCC PDAETNQMPVDQILQAFKDLKALINSVIAEDDKFKVWQQQNQSKSLDDFKRDTTQMDSLS CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH QETKELLSSIGSAGCANIMGSTANIEQAQQMSFAASFSTLDWATHANSVGNTTQKTITND HHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC AGEKVTDLISHSHKTQLSASVNGVTKTVTKHRTIDIPRAVEENKGPLDLALVAQDETGKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEEECCCCCCC MSESKAVYLTAHYNQEGKLVEMTHPEPLRFFSDEPGSPAYTVINNEVYTLPITKEKYDQL CCCCCEEEEEEEECCCCCEEECCCCCCHHHCCCCCCCCEEEEECCEEEEECCCHHHHHHH TKEISQNIQEQDKDKEREQEAVDKFTVGSRQTDIHKEKSIQQADEVSNDDPKSLKSMNEF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH TIGSHQTSDIYNEKSTRNPEEISSDAPKSLKSIAPDENKTQIQSKTDHKLQNSNEYVQHM CCCCCCCHHHHCCCCCCCHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHH INSFNQNYNKIDSNEQNRTEEVKLKPVVKSIPESPKNSTQIDPNEEGRSGYVKRVVESME HHHHCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH QTLQNHSEIAQRLQVNLANSSQHSSSTSITTPTNTPRNNNKSKSQTKGIG HHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCHHHHCCCC >Mature Secondary Structure APDNKPINNKSSGLISKSQEQNIKDLGKKIDLMIQQVDTLDSKMRSRSAECNTLNVKVI CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH RALNNVMKSVPETLQQFSQEILHQSKLARQQPQKGQYNDAFRKKRAEAKEKKEHLEKQKQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH EFMGLVSKLGEEMKLVGKPGGQMSEIKDTLDKLHAIVNKSAQHQLQNTLGELQAMINEHK HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QNQLQDALDDLENIINDHKQNQKEQKAPISPETHAHDVTSIKNQAQQNAGINQPDAPKSA HHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHH SKSAADISQSPQRSSPATPTGTGQQHEQKKTPPPVPPKPSKNTMEAINAKIAQAQQNAGI CHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC NQPDAPKSASKSAADIPQSPQHSSPVTPTATVQQHEPQKTPPPVPPKPGKDTIEELKAKI CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHH AQAQQNAGINQPDASKSASKSAADISQSTQHSSPVTPTATAQQQEPQKTPPPVPPKPSKN HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH IIEELKAKISQTQQQVDRQSYINPSSSPQPLSSTIEHAKDRVLTLDLQYRHAQAAQNMSG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHHHHHCCCC PDAETNQMPVDQILQAFKDLKALINSVIAEDDKFKVWQQQNQSKSLDDFKRDTTQMDSLS CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH QETKELLSSIGSAGCANIMGSTANIEQAQQMSFAASFSTLDWATHANSVGNTTQKTITND HHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC AGEKVTDLISHSHKTQLSASVNGVTKTVTKHRTIDIPRAVEENKGPLDLALVAQDETGKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEEECCCCCCC MSESKAVYLTAHYNQEGKLVEMTHPEPLRFFSDEPGSPAYTVINNEVYTLPITKEKYDQL CCCCCEEEEEEEECCCCCEEECCCCCCHHHCCCCCCCCEEEEECCEEEEECCCHHHHHHH TKEISQNIQEQDKDKEREQEAVDKFTVGSRQTDIHKEKSIQQADEVSNDDPKSLKSMNEF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH TIGSHQTSDIYNEKSTRNPEEISSDAPKSLKSIAPDENKTQIQSKTDHKLQNSNEYVQHM CCCCCCCHHHHCCCCCCCHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHH INSFNQNYNKIDSNEQNRTEEVKLKPVVKSIPESPKNSTQIDPNEEGRSGYVKRVVESME HHHHCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH QTLQNHSEIAQRLQVNLANSSQHSSSTSITTPTNTPRNNNKSKSQTKGIG HHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11491333 [H]