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The map label for this gene is ycfH [C]

Identifier: 189183673

GI number: 189183673

Start: 794494

End: 795282

Strand: Reverse

Name: ycfH [C]

Synonym: OTT_0766

Alternate gene names: 189183673

Gene position: 795282-794494 (Counterclockwise)

Preceding gene: 189183674

Following gene: 189183671

Centisome position: 39.59

GC content: 30.29

Gene sequence:

>789_bases
ATGTTAATTGATTCGCACTGCCATTTAAATATGTTAACTGAACCAAATGCAGCAATTAAAAACGCTATAGCTAATGGTGT
TAAATCTATGTTAACAATCAGTACTAACCTAACCGAATTTCCAGAAATATGCACTATAACGCAAAAATATTCCAACATTT
TTTCTTCAGTAGGCGTTCATCCAACTGAAGTAGCAAACTATCAGCATGTTAGTGCTGAGTTATTATCAGATTTAGCTCAA
AATCCTAAAACTGTCGCTATTGGAGAAACAGGATTAGATTATTTTCATAATAGTTCGAATGAACATAAGTTACTACAAAA
GAAAGTATTTATTGAACATATCAAAGCGGCTCATATAACTAAATTGCCTGTGATTGTACATACCCGAGATGCTGAACATG
ATACTTATGAAATCTTATGTAACGCATGTAAGAAATATGATTTTAAAGCTGTAATTCATTGTTTTACAGCCTCAAAAGAC
TTTGCTATTAAAATGTTAGAGCTAGGAATTTATATCTCAGTCTCAGGTATCATAACTTTTAAAAATGCAGAAAATCTAAG
AAAAACTATTTATGATATGCCAATATCTAGCCTATTGATAGAAACAGATTCTCCATATTTAGCCCCTGTACCTATGCGAA
GCAAACAAAATGAACCAGCATATTTAGTATATATTGCTGATTTAGTTAGTAGAATCAAAAATATTCCAGTTAATGAACTA
GCAAAGATAACAACTAATAATTTTCAAAAACTATTCTTAAAGGCAGATATATACAACAGTTCAATATAA

Upstream 100 bases:

>100_bases
TGTTTAGTTGTATTAATCGTTCTCATGCTATAAAACCAGGAAAAACTATTTTAGAACCAAAGCCAATTTTTGTTAAAATT
GAAGAATAAAAGAACAATAT

Downstream 100 bases:

>100_bases
GAAGTATGTTTTATACTGCATAAATATTACACATTCGCTCTATATTTTGAATGTTTTATGCTTATAAATTCTCGAATTAT
GAGATACAGCAAGCTTTATC

Product: Mg-dependent DNase, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MLIDSHCHLNMLTEPNAAIKNAIANGVKSMLTISTNLTEFPEICTITQKYSNIFSSVGVHPTEVANYQHVSAELLSDLAQ
NPKTVAIGETGLDYFHNSSNEHKLLQKKVFIEHIKAAHITKLPVIVHTRDAEHDTYEILCNACKKYDFKAVIHCFTASKD
FAIKMLELGIYISVSGIITFKNAENLRKTIYDMPISSLLIETDSPYLAPVPMRSKQNEPAYLVYIADLVSRIKNIPVNEL
AKITTNNFQKLFLKADIYNSSI

Sequences:

>Translated_262_residues
MLIDSHCHLNMLTEPNAAIKNAIANGVKSMLTISTNLTEFPEICTITQKYSNIFSSVGVHPTEVANYQHVSAELLSDLAQ
NPKTVAIGETGLDYFHNSSNEHKLLQKKVFIEHIKAAHITKLPVIVHTRDAEHDTYEILCNACKKYDFKAVIHCFTASKD
FAIKMLELGIYISVSGIITFKNAENLRKTIYDMPISSLLIETDSPYLAPVPMRSKQNEPAYLVYIADLVSRIKNIPVNEL
AKITTNNFQKLFLKADIYNSSI
>Mature_262_residues
MLIDSHCHLNMLTEPNAAIKNAIANGVKSMLTISTNLTEFPEICTITQKYSNIFSSVGVHPTEVANYQHVSAELLSDLAQ
NPKTVAIGETGLDYFHNSSNEHKLLQKKVFIEHIKAAHITKLPVIVHTRDAEHDTYEILCNACKKYDFKAVIHCFTASKD
FAIKMLELGIYISVSGIITFKNAENLRKTIYDMPISSLLIETDSPYLAPVPMRSKQNEPAYLVYIADLVSRIKNIPVNEL
AKITTNNFQKLFLKADIYNSSI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=27.7153558052434, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=27.7153558052434, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=27.4725274725275, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI14042943, Length=263, Percent_Identity=28.1368821292776, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=27.027027027027, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI225903439, Length=251, Percent_Identity=27.4900398406374, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI225903424, Length=285, Percent_Identity=25.9649122807018, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=7e-15,
Organism=Escherichia coli, GI1787342, Length=258, Percent_Identity=43.0232558139535, Blast_Score=201, Evalue=3e-53,
Organism=Escherichia coli, GI48994985, Length=239, Percent_Identity=32.6359832635983, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=29.4573643410853, Blast_Score=129, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI17559024, Length=266, Percent_Identity=30.4511278195489, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=28.6792452830189, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=302, Percent_Identity=25.8278145695364, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17543026, Length=295, Percent_Identity=24.7457627118644, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648690, Length=269, Percent_Identity=26.3940520446097, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24586117, Length=272, Percent_Identity=25.7352941176471, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI221330018, Length=272, Percent_Identity=25.7352941176471, Blast_Score=78, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29388; Mature: 29388

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDSHCHLNMLTEPNAAIKNAIANGVKSMLTISTNLTEFPEICTITQKYSNIFSSVGVH
CEECCCCCEEEECCCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
PTEVANYQHVSAELLSDLAQNPKTVAIGETGLDYFHNSSNEHKLLQKKVFIEHIKAAHIT
HHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHE
KLPVIVHTRDAEHDTYEILCNACKKYDFKAVIHCFTASKDFAIKMLELGIYISVSGIITF
ECEEEEEECCCCCHHHHHHHHHHHCCCHHHHHEECCCCCCCEEEEEEEEEEEEEEEEEEE
KNAENLRKTIYDMPISSLLIETDSPYLAPVPMRSKQNEPAYLVYIADLVSRIKNIPVNEL
CCHHHHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCEEEEEHHHHHHHHHCCCHHHH
AKITTNNFQKLFLKADIYNSSI
HHHHHCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MLIDSHCHLNMLTEPNAAIKNAIANGVKSMLTISTNLTEFPEICTITQKYSNIFSSVGVH
CEECCCCCEEEECCCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
PTEVANYQHVSAELLSDLAQNPKTVAIGETGLDYFHNSSNEHKLLQKKVFIEHIKAAHIT
HHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHE
KLPVIVHTRDAEHDTYEILCNACKKYDFKAVIHCFTASKDFAIKMLELGIYISVSGIITF
ECEEEEEECCCCCHHHHHHHHHHHCCCHHHHHEECCCCCCCEEEEEEEEEEEEEEEEEEE
KNAENLRKTIYDMPISSLLIETDSPYLAPVPMRSKQNEPAYLVYIADLVSRIKNIPVNEL
CCHHHHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCEEEEEHHHHHHHHHCCCHHHH
AKITTNNFQKLFLKADIYNSSI
HHHHHCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]