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The map label for this gene is rlpA [H]

Identifier: 189183671

GI number: 189183671

Start: 791247

End: 791912

Strand: Reverse

Name: rlpA [H]

Synonym: OTT_0764

Alternate gene names: 189183671

Gene position: 791912-791247 (Counterclockwise)

Preceding gene: 189183673

Following gene: 189183669

Centisome position: 39.42

GC content: 30.48

Gene sequence:

>666_bases
ATGAATCTTTTTCAGAAAATAAATATGCAGCTTATAGGTTTTGCTGCCAGTATACTACTATACAATCTTCCTTCTATATG
CATAGCAGCGCAAAATAATTCAATATGCCAAATTAATAAGCAGTTACTAATTATGTCTGAAGGGCATTATAAAATAGGCA
AGCCTTATAAAATAAATGGAAAGGTATATAGTCCTAAGCAAGTTGCTAATAATTTTCAGCAGGTAGGTTATGCATCTTGG
TATAGCTGTAAGAATAGCAACAGTAAAACTGCAAATTCAGATACATTTAATCCATCTCATTTAACCGCAGCTCATCATAT
ACTTCCTATGCCAAGTATAATAAAAGTAACTAATCTGCAAAATACTCGCACCTTGATTTTAATGGTAAATGATCGTGGCC
CTTTTGCAAAACGTAGAGTTTTAGATATATCAAGACGTGGAGCAGAATTGTTAGGTTTTATACGCCAAGGTGTAACAAAA
GTTAAAATAGAATTGATGCACTCTGAAACTCAGAAACTACTAAATATGATTTTATTTAATGTACCAAAGAGTATAATAGC
TAAAAATATACTGTGTAGTACTGATTACTACATCAAATCACTAAATATGAAACATAAAACTTCTTACTATTACATAATGT
TGAAAAATAAAAGAAAGCAACAATAG

Upstream 100 bases:

>100_bases
GTTAAGATTTAGTTTATACTTTTTTATTGCGAGATTACTTGAAATATTAAATTAATGTGTAGTAGTAAATGCTAATTCAT
AAAAATAAAACCTTAGTCAA

Downstream 100 bases:

>100_bases
TAGTATTTACTCAAAAGTTACCTTTGAGATTTAACCATTTGTATTAAATAATTTAGTAATAAAGATCTTTTAAGATACAA
GATAGTATAGCTGTAGGTTT

Product: rare lipoprotein A precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MNLFQKINMQLIGFAASILLYNLPSICIAAQNNSICQINKQLLIMSEGHYKIGKPYKINGKVYSPKQVANNFQQVGYASW
YSCKNSNSKTANSDTFNPSHLTAAHHILPMPSIIKVTNLQNTRTLILMVNDRGPFAKRRVLDISRRGAELLGFIRQGVTK
VKIELMHSETQKLLNMILFNVPKSIIAKNILCSTDYYIKSLNMKHKTSYYYIMLKNKRKQQ

Sequences:

>Translated_221_residues
MNLFQKINMQLIGFAASILLYNLPSICIAAQNNSICQINKQLLIMSEGHYKIGKPYKINGKVYSPKQVANNFQQVGYASW
YSCKNSNSKTANSDTFNPSHLTAAHHILPMPSIIKVTNLQNTRTLILMVNDRGPFAKRRVLDISRRGAELLGFIRQGVTK
VKIELMHSETQKLLNMILFNVPKSIIAKNILCSTDYYIKSLNMKHKTSYYYIMLKNKRKQQ
>Mature_221_residues
MNLFQKINMQLIGFAASILLYNLPSICIAAQNNSICQINKQLLIMSEGHYKIGKPYKINGKVYSPKQVANNFQQVGYASW
YSCKNSNSKTANSDTFNPSHLTAAHHILPMPSIIKVTNLQNTRTLILMVNDRGPFAKRRVLDISRRGAELLGFIRQGVTK
VKIELMHSETQKLLNMILFNVPKSIIAKNILCSTDYYIKSLNMKHKTSYYYIMLKNKRKQQ

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=141, Percent_Identity=34.0425531914894, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR005728
- InterPro:   IPR022438
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 25260; Mature: 25260

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLFQKINMQLIGFAASILLYNLPSICIAAQNNSICQINKQLLIMSEGHYKIGKPYKING
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCEEEEEECCCEECCCCEEECC
KVYSPKQVANNFQQVGYASWYSCKNSNSKTANSDTFNPSHLTAAHHILPMPSIIKVTNLQ
EEECHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCC
NTRTLILMVNDRGPFAKRRVLDISRRGAELLGFIRQGVTKVKIELMHSETQKLLNMILFN
CCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHH
VPKSIIAKNILCSTDYYIKSLNMKHKTSYYYIMLKNKRKQQ
CCHHHHHHHHHCCCCHHEEECCCCCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MNLFQKINMQLIGFAASILLYNLPSICIAAQNNSICQINKQLLIMSEGHYKIGKPYKING
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCEEEEEECCCEECCCCEEECC
KVYSPKQVANNFQQVGYASWYSCKNSNSKTANSDTFNPSHLTAAHHILPMPSIIKVTNLQ
EEECHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCC
NTRTLILMVNDRGPFAKRRVLDISRRGAELLGFIRQGVTKVKIELMHSETQKLLNMILFN
CCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHH
VPKSIIAKNILCSTDYYIKSLNMKHKTSYYYIMLKNKRKQQ
CCHHHHHHHHHCCCCHHEEECCCCCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]