| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is pncA [C]
Identifier: 189025921
GI number: 189025921
Start: 765689
End: 766525
Strand: Reverse
Name: pncA [C]
Synonym: TPASS_0696
Alternate gene names: 189025921
Gene position: 766525-765689 (Counterclockwise)
Preceding gene: 189025922
Following gene: 189025918
Centisome position: 67.27
GC content: 54.48
Gene sequence:
>837_bases ATGAGCAGAGCCTTTTTTTTGGTTGATTTTCAAAATGATTTTTGCGATCCACGCGGTGCGTTGTTCGTTCCCGGCGCGGA TCAGGACTGTGTGCGCGTTGCTGAGTTCTTGCGCGTGCACGCTGCGCATGTGGATGCATTGTACGTAAGTTGCGATCGGC ACCCGCGGATGCACGTTGCGCACCCCTGTTTTTGGCGCTCCCTGACAGGAGATGCTCTCGGTCCTTTTGATACAGTTTCG TTCGAACGTTTGCGTTCTGGGGCGTGTGTGCCTGTGCGTGTCGGCTATGTACAGACCGTAGCGGGGTACTTGGCATTCCG TGCATATACCGGAAAGGGGCCTCTATACCTTTGGCCCGAGCATTGTGTGCGTGGCAGTTGGGGACAGGCGGTGCACCCGC TTATCGTGGAGGCGGTGCGCTTTTGGCAACGCGCGCATCGTACAAGACATCCTCAGTTTTTCTTTAAAGGAGAAAACCCC TGTGTGGAACAATTTAGTGTGCTGTCCTCGGAGTATCCAGCGTCTCAAGGGACTGCGGATTCTCTTTTTGTTAAGCGCTG CCAAATGCTCCGCGCACATGAGCGTATTTTCGTAGCAGGTGAAGCACTCTCGCATTGTGTTGTGTGTACGCTGCAGGATA TGCAGCGCGCAGGGGTCCTCTCACGCGTGAGTTTGTTGAAGGACGGTAGTAGCGTGGTGCCTGGTTTTGAGCAAAAAACG GCCGCGTCCGTGCAGACTCTCTGTGCACAGGGACTGACGTGGCTGCGTATGACTGAGGCCGCAGAGCTTTTGCGCACGCG TTTTATTTTTTCTGGCACTGAACATCAGGACAGTTGA
Upstream 100 bases:
>100_bases CCGCTGACGGTGCAGATAGGGCCTGTGTTCCGGGTCTAGCTTGTGCTGCTGGGGTGGGGTATGCGCGCACGCGCGTGCGC GTTCCTGCGCGCGCTTCCCT
Downstream 100 bases:
>100_bases AAGGAGTCAAACGCGTATAGTAATCCTTGAATGCCACCGCGAATAAGTGCGCGCCATAACTCTGCGAGGTTTTGGGAACG CGCAAAGCACAGCGCAGGTT
Product: nicotinamidase
Products: nicotinate; NH3
Alternate protein names: None
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MSRAFFLVDFQNDFCDPRGALFVPGADQDCVRVAEFLRVHAAHVDALYVSCDRHPRMHVAHPCFWRSLTGDALGPFDTVS FERLRSGACVPVRVGYVQTVAGYLAFRAYTGKGPLYLWPEHCVRGSWGQAVHPLIVEAVRFWQRAHRTRHPQFFFKGENP CVEQFSVLSSEYPASQGTADSLFVKRCQMLRAHERIFVAGEALSHCVVCTLQDMQRAGVLSRVSLLKDGSSVVPGFEQKT AASVQTLCAQGLTWLRMTEAAELLRTRFIFSGTEHQDS
Sequences:
>Translated_278_residues MSRAFFLVDFQNDFCDPRGALFVPGADQDCVRVAEFLRVHAAHVDALYVSCDRHPRMHVAHPCFWRSLTGDALGPFDTVS FERLRSGACVPVRVGYVQTVAGYLAFRAYTGKGPLYLWPEHCVRGSWGQAVHPLIVEAVRFWQRAHRTRHPQFFFKGENP CVEQFSVLSSEYPASQGTADSLFVKRCQMLRAHERIFVAGEALSHCVVCTLQDMQRAGVLSRVSLLKDGSSVVPGFEQKT AASVQTLCAQGLTWLRMTEAAELLRTRFIFSGTEHQDS >Mature_277_residues SRAFFLVDFQNDFCDPRGALFVPGADQDCVRVAEFLRVHAAHVDALYVSCDRHPRMHVAHPCFWRSLTGDALGPFDTVSF ERLRSGACVPVRVGYVQTVAGYLAFRAYTGKGPLYLWPEHCVRGSWGQAVHPLIVEAVRFWQRAHRTRHPQFFFKGENPC VEQFSVLSSEYPASQGTADSLFVKRCQMLRAHERIFVAGEALSHCVVCTLQDMQRAGVLSRVSLLKDGSSVVPGFEQKTA ASVQTLCAQGLTWLRMTEAAELLRTRFIFSGTEHQDS
Specific function: NAD biosynthesis; nicotinamide to NaMN; first step. [C]
COG id: COG1335
COG function: function code Q; Amidases related to nicotinamidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.5.1.19
Molecular weight: Translated: 31187; Mature: 31056
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAFFLVDFQNDFCDPRGALFVPGADQDCVRVAEFLRVHAAHVDALYVSCDRHPRMHVA CCCEEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEC HPCFWRSLTGDALGPFDTVSFERLRSGACVPVRVGYVQTVAGYLAFRAYTGKGPLYLWPE CCHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHEECCCCCEEECHH HCVRGSWGQAVHPLIVEAVRFWQRAHRTRHPQFFFKGENPCVEQFSVLSSEYPASQGTAD HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCHH SLFVKRCQMLRAHERIFVAGEALSHCVVCTLQDMQRAGVLSRVSLLKDGSSVVPGFEQKT HHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH AASVQTLCAQGLTWLRMTEAAELLRTRFIFSGTEHQDS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SRAFFLVDFQNDFCDPRGALFVPGADQDCVRVAEFLRVHAAHVDALYVSCDRHPRMHVA CCEEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEC HPCFWRSLTGDALGPFDTVSFERLRSGACVPVRVGYVQTVAGYLAFRAYTGKGPLYLWPE CCHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHEECCCCCEEECHH HCVRGSWGQAVHPLIVEAVRFWQRAHRTRHPQFFFKGENPCVEQFSVLSSEYPASQGTAD HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCHH SLFVKRCQMLRAHERIFVAGEALSHCVVCTLQDMQRAGVLSRVSLLKDGSSVVPGFEQKT HHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH AASVQTLCAQGLTWLRMTEAAELLRTRFIFSGTEHQDS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: nicotinamide; H2O
Specific reaction: nicotinamide + H2O = nicotinate + NH3
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA