| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025918
Identifier: 189025918
GI number: 189025918
Start: 761661
End: 762983
Strand: Reverse
Name: 189025918
Synonym: TPASS_0693
Alternate gene names: NA
Gene position: 762983-761661 (Counterclockwise)
Preceding gene: 189025921
Following gene: 189025917
Centisome position: 66.96
GC content: 56.69
Gene sequence:
>1323_bases ATGGACCGTTTTTTTTGTACGGTGTGGGTGTGGAGTGTGCTTTTTGGCGCCTGTACGTCACAGACACGCTCAAGTTTTTC CCTGAATGCGGATGGCCTGAATTCTTCGGGTGTGGCCCATGCTTCTGAGCATGTTTCTCATGCTGCGGCAATGGGGAATG AGGCGGGCGCGGCAGATGCGAGTGTGTCTGAATCCCCGGCGTCTTTTTCTCCTGGGCGGGGGTCTGCGTGGGTGCAGGGT ACTGTTGGACATATCCCTGCCGAGCACCACGCGGCATTGCAGGCGTTTTTTGACACAGAAGAGGGTATGCGCATCACGGA TGCGCTCTGTACGGGGGACACATACGCTGCTTTCAATGAGCTTGAAGCGTTATATGACCCTTCTTCTGAGACTGACACGG CGCGTAGCCGTGCGCTGCACGCGTATGTCCGTGCGCTGCTGCAAGGTATACGCCTTGCTCCGCGCGTTGCACCGCCGACC CATGTAGGGGTTAGTGCCACGTTGCAGTATCGCGACAGCGTGTGGCCACTACAGCGTGGGCGTTTTACGCTATGCTACCA AATTGGTCCTGAACATGGCGATGTGATGCAGGTGACGCTGTGCGCAGATACGCAGGGAGTGCTCTTTTTCCCCTTTCCGT CAGCGGCGCTTTCGCAGGAGGTGACGCTTTCGTTTGACACTGCCGCTTTGGTACATGCTCCTTCCCTTTGTGCACAGGAT TCTGCGTTGCAGGAACGACCCTCATCTCCCGAACCTGTCGTGTCTACCATACCGTCCCCCGAGGGGGAAGAAAACAGCGC AGCGGGGGAGCCTGCGCTTGCTAATTTGGTGTGTCGCGTTGCGGCGCCTTCGTCTGATCCAAAACAGCATCCCGTGCGCA GGCAGGTATCTACAACGATATGTATTCTAGATTATGGGAAGACAGGACGGCCGCTGACGCACGAGAATCTGACGGCCACC CGTTTGCTCGGGGGGCTTTTGAAGCGTCGGTTTGTGAACATCGGGCTTGATAGTTTGTACGGGGTAGGTAAGGTGCCGGA CCACGCGGTAATCGCGCGCGCGCGTAAAAAGTTTGGGGGGAATGTCCGTAGACTTGTGTTTGGCTTGACTCAGGTAAGGC GTCTTGAACGCGACTCTGATGCACGCTGGAAGTGTGTGCTGTTCGCGCAGCTGCATGTGTGGGATTTCCCAAAGGGAGCG TATACGCATCACTTTACTGCACAGTGCACGGAGACCGGGGATACTGAATCTCAAAGTTATGTTCGTGCGCGTACGCGCAT GGGCGAGACGGTGCTTTCGGACGTGCTCCAGTGCTTCCTGTAA
Upstream 100 bases:
>100_bases TTTGGTGGATATCGTAGGGTGGCTGTAACGAAGGGCCCGTGACGGTACTTTAGCACGCGGCTGTGGTGTGCGCTGCAGAA TAAAGAGGTGTAGATTATAC
Downstream 100 bases:
>100_bases TTGTGTTTATTTCGTAGATCGGGGTATGGGGATAGGATGAGAGGGTGTTCCCCGGGGTTTGTACAGCGTTTTGAAGAATT GACGCGTGTGTTGTTTCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 440; Mature: 440
Protein sequence:
>440_residues MDRFFCTVWVWSVLFGACTSQTRSSFSLNADGLNSSGVAHASEHVSHAAAMGNEAGAADASVSESPASFSPGRGSAWVQG TVGHIPAEHHAALQAFFDTEEGMRITDALCTGDTYAAFNELEALYDPSSETDTARSRALHAYVRALLQGIRLAPRVAPPT HVGVSATLQYRDSVWPLQRGRFTLCYQIGPEHGDVMQVTLCADTQGVLFFPFPSAALSQEVTLSFDTAALVHAPSLCAQD SALQERPSSPEPVVSTIPSPEGEENSAAGEPALANLVCRVAAPSSDPKQHPVRRQVSTTICILDYGKTGRPLTHENLTAT RLLGGLLKRRFVNIGLDSLYGVGKVPDHAVIARARKKFGGNVRRLVFGLTQVRRLERDSDARWKCVLFAQLHVWDFPKGA YTHHFTAQCTETGDTESQSYVRARTRMGETVLSDVLQCFL
Sequences:
>Translated_440_residues MDRFFCTVWVWSVLFGACTSQTRSSFSLNADGLNSSGVAHASEHVSHAAAMGNEAGAADASVSESPASFSPGRGSAWVQG TVGHIPAEHHAALQAFFDTEEGMRITDALCTGDTYAAFNELEALYDPSSETDTARSRALHAYVRALLQGIRLAPRVAPPT HVGVSATLQYRDSVWPLQRGRFTLCYQIGPEHGDVMQVTLCADTQGVLFFPFPSAALSQEVTLSFDTAALVHAPSLCAQD SALQERPSSPEPVVSTIPSPEGEENSAAGEPALANLVCRVAAPSSDPKQHPVRRQVSTTICILDYGKTGRPLTHENLTAT RLLGGLLKRRFVNIGLDSLYGVGKVPDHAVIARARKKFGGNVRRLVFGLTQVRRLERDSDARWKCVLFAQLHVWDFPKGA YTHHFTAQCTETGDTESQSYVRARTRMGETVLSDVLQCFL >Mature_440_residues MDRFFCTVWVWSVLFGACTSQTRSSFSLNADGLNSSGVAHASEHVSHAAAMGNEAGAADASVSESPASFSPGRGSAWVQG TVGHIPAEHHAALQAFFDTEEGMRITDALCTGDTYAAFNELEALYDPSSETDTARSRALHAYVRALLQGIRLAPRVAPPT HVGVSATLQYRDSVWPLQRGRFTLCYQIGPEHGDVMQVTLCADTQGVLFFPFPSAALSQEVTLSFDTAALVHAPSLCAQD SALQERPSSPEPVVSTIPSPEGEENSAAGEPALANLVCRVAAPSSDPKQHPVRRQVSTTICILDYGKTGRPLTHENLTAT RLLGGLLKRRFVNIGLDSLYGVGKVPDHAVIARARKKFGGNVRRLVFGLTQVRRLERDSDARWKCVLFAQLHVWDFPKGA YTHHFTAQCTETGDTESQSYVRARTRMGETVLSDVLQCFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y693_TREPA (O83691)
Other databases:
- EMBL: AE000520 - PIR: B71293 - RefSeq: NP_219130.1 - ProteinModelPortal: O83691 - IntAct: O83691 - GeneID: 2611781 - GenomeReviews: AE000520_GR - KEGG: tpa:TP0693 - NMPDR: fig|243276.1.peg.689 - TIGR: TP_0693 - HOGENOM: HBG251039 - ProtClustDB: CLSK2300270 - BioCyc: TPAL243276:TP_0693-MONOMER
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47673; Mature: 47673
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRFFCTVWVWSVLFGACTSQTRSSFSLNADGLNSSGVAHASEHVSHAAAMGNEAGAADA CCCEEHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC SVSESPASFSPGRGSAWVQGTVGHIPAEHHAALQAFFDTEEGMRITDALCTGDTYAAFNE CCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHCCCHHHHHHH LEALYDPSSETDTARSRALHAYVRALLQGIRLAPRVAPPTHVGVSATLQYRDSVWPLQRG HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCC RFTLCYQIGPEHGDVMQVTLCADTQGVLFFPFPSAALSQEVTLSFDTAALVHAPSLCAQD CEEEEEEECCCCCCEEEEEEEECCCCEEEEECCCHHHCCCEEEEECCHHHHHCCHHHHCC SALQERPSSPEPVVSTIPSPEGEENSAAGEPALANLVCRVAAPSSDPKQHPVRRQVSTTI HHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHCEEE CILDYGKTGRPLTHENLTATRLLGGLLKRRFVNIGLDSLYGVGKVPDHAVIARARKKFGG EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHCC NVRRLVFGLTQVRRLERDSDARWKCVLFAQLHVWDFPKGAYTHHFTAQCTETGDTESQSY CHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCHHHH VRARTRMGETVLSDVLQCFL HHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MDRFFCTVWVWSVLFGACTSQTRSSFSLNADGLNSSGVAHASEHVSHAAAMGNEAGAADA CCCEEHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC SVSESPASFSPGRGSAWVQGTVGHIPAEHHAALQAFFDTEEGMRITDALCTGDTYAAFNE CCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHCCCHHHHHHH LEALYDPSSETDTARSRALHAYVRALLQGIRLAPRVAPPTHVGVSATLQYRDSVWPLQRG HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCC RFTLCYQIGPEHGDVMQVTLCADTQGVLFFPFPSAALSQEVTLSFDTAALVHAPSLCAQD CEEEEEEECCCCCCEEEEEEEECCCCEEEEECCCHHHCCCEEEEECCHHHHHCCHHHHCC SALQERPSSPEPVVSTIPSPEGEENSAAGEPALANLVCRVAAPSSDPKQHPVRRQVSTTI HHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCHHHHHHCEEE CILDYGKTGRPLTHENLTATRLLGGLLKRRFVNIGLDSLYGVGKVPDHAVIARARKKFGG EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHCC NVRRLVFGLTQVRRLERDSDARWKCVLFAQLHVWDFPKGAYTHHFTAQCTETGDTESQSY CHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCHHHH VRARTRMGETVLSDVLQCFL HHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9665876