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The map label for this gene is potC [H]

Identifier: 189025879

GI number: 189025879

Start: 719194

End: 720012

Strand: Direct

Name: potC [H]

Synonym: TPASS_0654

Alternate gene names: 189025879

Gene position: 719194-720012 (Clockwise)

Preceding gene: 189025878

Following gene: 189025880

Centisome position: 63.12

GC content: 50.06

Gene sequence:

>819_bases
ATGCCTAATTGCCGTCTGATCCACACGCGCGCACGCACTCCCCTACGGTGTTCCTTCTCTGCTGTGCTGCTGGCGGCAGT
TGTCTCGTTCCTATTTCTGCCGCTTGCAGTTATTGCGCTTTTTTCCTTCAACAAGGATAAATCCCTTATCTGGACCGGTT
TCTCGCTGCGCTGGTACACAGAGCTATTCTTTTATTCAGAAAAACTGTGGTCTTCCTTTCTTAATAGCGTGCTTATAGCA
TCTGTTTCTGCACTTGTAGCAACAATTGTGGGGACTGCCGCTGCCATCGCAATTCGTTGGTATCGTTTCTCAGGCCGGCT
ATATGCGCAGGTAATGAGCCTTCTGCCCATGCTGCTCCCTGAGGTTATCACAGGTATGGCAATGCTCGTTTTTTTCTCCC
TAGTACGCCTGCCGCTGGGGCGCGCAAGCATCATCACCGCTCATATCACCTTTTGTCTGCCCTTCGTGCTCCTGCTCATC
CTTACTCGCATCGACACCTTTGACCTCTCTCTCATAGAGGCGGCGCAAGACTTAGGTGCAAACGAGTGGCAAGCGCTAGG
AAAAATCGTGATCCCTGCCATCATGCCAGGCATACTGTCTGGCTTTTTACTTTCAGTAACCCTTTCTCTGGAAGATTTTG
TCATCACCTTTTTCGTTGCAGGACCGGGCTCCACCACACTCCCCCTGTATGTGTTTTCAATGATCCGCTATGGGGTCTCT
CCTATCATCAATGCCCTTTCCCTGATCATGATGGCAGGGATTGTAGGGGTCGCCTACCTCCTGCGCAATTCTTTAAAAAC
AATAGTCCATTCTAAGTAA

Upstream 100 bases:

>100_bases
ATGCTCGTTACCCTCGCAGGGGGGGTAGGAGTACTCTGGATACTTGCAGAAAGCGGTGCCTGCAATACAACACCTCCCCC
TTGCGGAGGACGCCGCTCAT

Downstream 100 bases:

>100_bases
CTACTTTCTGCAAACAATCTCGTAAGGAGCAAAGCATGAAACGTTTTTGTGTGAGCAGTTCGCGCATTCTTTCTCTCCTT
TTTCTCTCCCTCTGGATGGG

Product: spermidine/putrescine ABC transporter, permease protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MPNCRLIHTRARTPLRCSFSAVLLAAVVSFLFLPLAVIALFSFNKDKSLIWTGFSLRWYTELFFYSEKLWSSFLNSVLIA
SVSALVATIVGTAAAIAIRWYRFSGRLYAQVMSLLPMLLPEVITGMAMLVFFSLVRLPLGRASIITAHITFCLPFVLLLI
LTRIDTFDLSLIEAAQDLGANEWQALGKIVIPAIMPGILSGFLLSVTLSLEDFVITFFVAGPGSTTLPLYVFSMIRYGVS
PIINALSLIMMAGIVGVAYLLRNSLKTIVHSK

Sequences:

>Translated_272_residues
MPNCRLIHTRARTPLRCSFSAVLLAAVVSFLFLPLAVIALFSFNKDKSLIWTGFSLRWYTELFFYSEKLWSSFLNSVLIA
SVSALVATIVGTAAAIAIRWYRFSGRLYAQVMSLLPMLLPEVITGMAMLVFFSLVRLPLGRASIITAHITFCLPFVLLLI
LTRIDTFDLSLIEAAQDLGANEWQALGKIVIPAIMPGILSGFLLSVTLSLEDFVITFFVAGPGSTTLPLYVFSMIRYGVS
PIINALSLIMMAGIVGVAYLLRNSLKTIVHSK
>Mature_271_residues
PNCRLIHTRARTPLRCSFSAVLLAAVVSFLFLPLAVIALFSFNKDKSLIWTGFSLRWYTELFFYSEKLWSSFLNSVLIAS
VSALVATIVGTAAAIAIRWYRFSGRLYAQVMSLLPMLLPEVITGMAMLVFFSLVRLPLGRASIITAHITFCLPFVLLLIL
TRIDTFDLSLIEAAQDLGANEWQALGKIVIPAIMPGILSGFLLSVTLSLEDFVITFFVAGPGSTTLPLYVFSMIRYGVSP
IINALSLIMMAGIVGVAYLLRNSLKTIVHSK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=211, Percent_Identity=39.8104265402844, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1787081, Length=269, Percent_Identity=39.4052044609665, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787714, Length=228, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788764, Length=175, Percent_Identity=27.4285714285714, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29951; Mature: 29820

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNCRLIHTRARTPLRCSFSAVLLAAVVSFLFLPLAVIALFSFNKDKSLIWTGFSLRWYT
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH
ELFFYSEKLWSSFLNSVLIASVSALVATIVGTAAAIAIRWYRFSGRLYAQVMSLLPMLLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EVITGMAMLVFFSLVRLPLGRASIITAHITFCLPFVLLLILTRIDTFDLSLIEAAQDLGA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
NEWQALGKIVIPAIMPGILSGFLLSVTLSLEDFVITFFVAGPGSTTLPLYVFSMIRYGVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCHH
PIINALSLIMMAGIVGVAYLLRNSLKTIVHSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PNCRLIHTRARTPLRCSFSAVLLAAVVSFLFLPLAVIALFSFNKDKSLIWTGFSLRWYT
CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH
ELFFYSEKLWSSFLNSVLIASVSALVATIVGTAAAIAIRWYRFSGRLYAQVMSLLPMLLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EVITGMAMLVFFSLVRLPLGRASIITAHITFCLPFVLLLILTRIDTFDLSLIEAAQDLGA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
NEWQALGKIVIPAIMPGILSGFLLSVTLSLEDFVITFFVAGPGSTTLPLYVFSMIRYGVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCHH
PIINALSLIMMAGIVGVAYLLRNSLKTIVHSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]