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The map label for this gene is secF

Identifier: 189025644

GI number: 189025644

Start: 438385

End: 439647

Strand: Direct

Name: secF

Synonym: TPASS_0411

Alternate gene names: 189025644

Gene position: 438385-439647 (Clockwise)

Preceding gene: 189025643

Following gene: 189025647

Centisome position: 38.47

GC content: 54.24

Gene sequence:

>1263_bases
ATGAGACAGGTGGTGCGTTTCAGTTTGCTGTTCCTGCCATGCGCGATACTCAGTGTAGTTCTCATTGGTGCGGGAGTGCT
CCGTTGGGCATTGTGGGGGATGAGCTTTGGTATCGACTTTCAGTCTGGTTTGATTGAACGGCTGAGGATAGCACCTCCTG
CTTTCTCTCTCGTGTACACCGGAACGCAGTCGATGCAGTTTTTTCAGGATGAACAGAAGGTTGTGTTTACTGTCTCTTCG
CCTGGGGTGCTCGGTGAGCGTTATGAATTTTTGTATACGGAGTATCCAACCCTTCGTGCCTTCTCCGAGGGAGCAAAGAA
GGTGGAGCACCTCAGTGTTACGCTCCATGCCCCTGAGACTGTGTACATGCGTGATACATTCTCCGGGGCGGAGGGCTCCA
CGTTGTCGAGTGCTTCGTGTTTTGTGCATTACTTCTCGGAGGACGTTCGTGCGCCAGGGGTGGAGGAGTTGCGCCGTGTG
CTGAAGGATGTACCGTCTGCGGTGGTACAGCAGGTAGGGGTGCGCGCTGAGCATACCTTTCAAGTTCGCGTTGCAGCTGA
AACTGCCTTCCCGTCCTCCCTTTTGCCAGAGCAGGGAGGAACTGCTCTGGCACAGTCCGATGCTCCCGATCTTGTTACCC
CTCAAGGTGCGGTGGAAAGCGTGGTGTACGCGGCGCTCGTGCGCGCGTATGGAGCAGATCATGTGGTCCGTTTAGCGATG
GATTTTGTCGGATCTCGTTTTTCTCATCTGTTGGTGCGTCAGGCGTTGTTGTTGGTTTTGGGTGCCTTGGTGTTGATTTT
TTTATATGTGGCGCTTCGTTTTCGGTGGTTCTTTGCGCTTGGAGCGATAGTCGCGCTCGTGCATGATGCGTGCATTATGG
TGTCATTCATGGTGTGGTTTGGTTTGGAGTTTAACTCTGCGAGTATCGCGGCGATTCTGACGATTATCGGGTACTCGATC
AACGACACGGTGGTAGTTTTTGATCGGGTGAGACAGACCATTCTCCTGGATCCTATCGCGTCAGTGACGACAGTACTTGA
CCGATCGCAAACAGACATGCTCACGCGCACTGTAGTGACAACGGTGACGACGCTGCTTGCAGCGCTGATGTTGTATGTGT
TTACCGAGGGAGGCAGTCGGGATTTCTCACTCGCGCTAATGGTGGGGATGGTCAGCGGCGTGTACTCGACCATTTACATC
GCCGGTGGCTGTATCGCCCTGATCAGCCGGGGGAAGAGCGGAGGTCAGCTGCTCGGACTCTGA

Upstream 100 bases:

>100_bases
CCGTATTTACGGCATTGTTCGTTTCCCGTCTGATGTTTGACTACGGGACGGAGGTTTTACACAAAAAGACCGTGCGCATT
GGATGGAGGATTGCTCGCGT

Downstream 100 bases:

>100_bases
AACCCCGCACGCGCGGCTGTGTGTAGGAAAGGAAAGGAGAGAGGGAAGAGAGGGGACTCGGCGCTGCCGACTTTGCTATT
TCTTCCTTACAATCGTTTTT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MRQVVRFSLLFLPCAILSVVLIGAGVLRWALWGMSFGIDFQSGLIERLRIAPPAFSLVYTGTQSMQFFQDEQKVVFTVSS
PGVLGERYEFLYTEYPTLRAFSEGAKKVEHLSVTLHAPETVYMRDTFSGAEGSTLSSASCFVHYFSEDVRAPGVEELRRV
LKDVPSAVVQQVGVRAEHTFQVRVAAETAFPSSLLPEQGGTALAQSDAPDLVTPQGAVESVVYAALVRAYGADHVVRLAM
DFVGSRFSHLLVRQALLLVLGALVLIFLYVALRFRWFFALGAIVALVHDACIMVSFMVWFGLEFNSASIAAILTIIGYSI
NDTVVVFDRVRQTILLDPIASVTTVLDRSQTDMLTRTVVTTVTTLLAALMLYVFTEGGSRDFSLALMVGMVSGVYSTIYI
AGGCIALISRGKSGGQLLGL

Sequences:

>Translated_420_residues
MRQVVRFSLLFLPCAILSVVLIGAGVLRWALWGMSFGIDFQSGLIERLRIAPPAFSLVYTGTQSMQFFQDEQKVVFTVSS
PGVLGERYEFLYTEYPTLRAFSEGAKKVEHLSVTLHAPETVYMRDTFSGAEGSTLSSASCFVHYFSEDVRAPGVEELRRV
LKDVPSAVVQQVGVRAEHTFQVRVAAETAFPSSLLPEQGGTALAQSDAPDLVTPQGAVESVVYAALVRAYGADHVVRLAM
DFVGSRFSHLLVRQALLLVLGALVLIFLYVALRFRWFFALGAIVALVHDACIMVSFMVWFGLEFNSASIAAILTIIGYSI
NDTVVVFDRVRQTILLDPIASVTTVLDRSQTDMLTRTVVTTVTTLLAALMLYVFTEGGSRDFSLALMVGMVSGVYSTIYI
AGGCIALISRGKSGGQLLGL
>Mature_420_residues
MRQVVRFSLLFLPCAILSVVLIGAGVLRWALWGMSFGIDFQSGLIERLRIAPPAFSLVYTGTQSMQFFQDEQKVVFTVSS
PGVLGERYEFLYTEYPTLRAFSEGAKKVEHLSVTLHAPETVYMRDTFSGAEGSTLSSASCFVHYFSEDVRAPGVEELRRV
LKDVPSAVVQQVGVRAEHTFQVRVAAETAFPSSLLPEQGGTALAQSDAPDLVTPQGAVESVVYAALVRAYGADHVVRLAM
DFVGSRFSHLLVRQALLLVLGALVLIFLYVALRFRWFFALGAIVALVHDACIMVSFMVWFGLEFNSASIAAILTIIGYSI
NDTVVVFDRVRQTILLDPIASVTTVLDRSQTDMLTRTVVTTVTTLLAALMLYVFTEGGSRDFSLALMVGMVSGVYSTIYI
AGGCIALISRGKSGGQLLGL

Specific function: Involved in protein export

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily

Homologues:

Organism=Escherichia coli, GI1786610, Length=162, Percent_Identity=34.5679012345679, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECF_TREPA (O83426)

Other databases:

- EMBL:   AE000520
- PIR:   A71327
- RefSeq:   NP_218851.1
- ProteinModelPortal:   O83426
- IntAct:   O83426
- GeneID:   2610868
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0411
- NMPDR:   fig|243276.1.peg.410
- TIGR:   TP_0411
- HOGENOM:   HBG250963
- OMA:   LECKEIL
- ProtClustDB:   PRK13022
- BioCyc:   TPAL243276:TP_0411-MONOMER
- InterPro:   IPR022813
- InterPro:   IPR022645
- InterPro:   IPR005665
- PRINTS:   PR01755
- TIGRFAMs:   TIGR00916
- TIGRFAMs:   TIGR00966

Pfam domain/function: PF02355 SecD_SecF

EC number: NA

Molecular weight: Translated: 45732; Mature: 45732

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x2011c6c0)-; HASH(0x2005ab94)-; HASH(0x1f55a874)-; HASH(0x1f6da724)-; HASH(0x20283c8c)-; HASH(0x20b9e700)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQVVRFSLLFLPCAILSVVLIGAGVLRWALWGMSFGIDFQSGLIERLRIAPPAFSLVYT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE
GTQSMQFFQDEQKVVFTVSSPGVLGERYEFLYTEYPTLRAFSEGAKKVEHLSVTLHAPET
CCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEECCCE
VYMRDTFSGAEGSTLSSASCFVHYFSEDVRAPGVEELRRVLKDVPSAVVQQVGVRAEHTF
EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
QVRVAAETAFPSSLLPEQGGTALAQSDAPDLVTPQGAVESVVYAALVRAYGADHVVRLAM
EEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
DFVGSRFSHLLVRQALLLVLGALVLIFLYVALRFRWFFALGAIVALVHDACIMVSFMVWF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLEFNSASIAAILTIIGYSINDTVVVFDRVRQTILLDPIASVTTVLDRSQTDMLTRTVVT
CCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
TVTTLLAALMLYVFTEGGSRDFSLALMVGMVSGVYSTIYIAGGCIALISRGKSGGQLLGL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
>Mature Secondary Structure
MRQVVRFSLLFLPCAILSVVLIGAGVLRWALWGMSFGIDFQSGLIERLRIAPPAFSLVYT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE
GTQSMQFFQDEQKVVFTVSSPGVLGERYEFLYTEYPTLRAFSEGAKKVEHLSVTLHAPET
CCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEECCCE
VYMRDTFSGAEGSTLSSASCFVHYFSEDVRAPGVEELRRVLKDVPSAVVQQVGVRAEHTF
EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
QVRVAAETAFPSSLLPEQGGTALAQSDAPDLVTPQGAVESVVYAALVRAYGADHVVRLAM
EEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
DFVGSRFSHLLVRQALLLVLGALVLIFLYVALRFRWFFALGAIVALVHDACIMVSFMVWF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLEFNSASIAAILTIIGYSINDTVVVFDRVRQTILLDPIASVTTVLDRSQTDMLTRTVVT
CCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
TVTTLLAALMLYVFTEGGSRDFSLALMVGMVSGVYSTIYIAGGCIALISRGKSGGQLLGL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9665876