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The map label for this gene is rbpD [H]

Identifier: 189025589

GI number: 189025589

Start: 380331

End: 380648

Strand: Direct

Name: rbpD [H]

Synonym: TPASS_0356

Alternate gene names: 189025589

Gene position: 380331-380648 (Clockwise)

Preceding gene: 189025587

Following gene: 189025590

Centisome position: 33.38

GC content: 47.8

Gene sequence:

>318_bases
ATGGAGAGGGGTAATCCAATTGCCGTGGAACGGCGAAGGTTCTGTGTTATGTCCGCAAAGATTTACGTCGGTAATTTAAA
TTATGCCACCACTGAGGCTGGATTGGCCTCCCTTTTTTCTCAGTTTGGGGAAGTGCTGTCCGTGGCTGTAATCAAGGATA
AGCTTACGCAGCGGTCGAAGGGCTTTGGTTTTGTTGAGATGGAAAGCGCAGAATCAGCCGAGTTGGTTATTAACGAGTTG
AATGAGAAGGAGTTTGAAGGGCGTAGGCTTCGCGTTAACTATGCGGAGGAGAAGCCGCGTTTTCCCTTTAAGAATTAG

Upstream 100 bases:

>100_bases
CATGTTAGGATCCACCAAGCGTGACTATTCTTTTCTGGCCGCGTGTGATGCATAAGACACTCCCATAGCACCGTTAAGAG
TCTCGCGAAACCTCCTCCGT

Downstream 100 bases:

>100_bases
TGGAGGATGGGGAGGACTTTCCATCGTGGCGCATGTTTTTGGCGTAAGGTGCTTTCGCGTGCGTTATCTCATTTCTCGTC
GTCTTTTGGTTCTCCCCGTT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MERGNPIAVERRRFCVMSAKIYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSKGFGFVEMESAESAELVINEL
NEKEFEGRRLRVNYAEEKPRFPFKN

Sequences:

>Translated_105_residues
MERGNPIAVERRRFCVMSAKIYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSKGFGFVEMESAESAELVINEL
NEKEFEGRRLRVNYAEEKPRFPFKN
>Mature_105_residues
MERGNPIAVERRRFCVMSAKIYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSKGFGFVEMESAESAELVINEL
NEKEFEGRRLRVNYAEEKPRFPFKN

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI5803137, Length=82, Percent_Identity=40.2439024390244, Blast_Score=74, Evalue=2e-14,
Organism=Homo sapiens, GI4502847, Length=77, Percent_Identity=41.5584415584416, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI14149675, Length=86, Percent_Identity=40.6976744186046, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI4557493, Length=86, Percent_Identity=40.6976744186046, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI242117971, Length=83, Percent_Identity=36.144578313253, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI21361809, Length=83, Percent_Identity=36.144578313253, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI116734698, Length=79, Percent_Identity=36.7088607594937, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI116734694, Length=79, Percent_Identity=36.7088607594937, Blast_Score=62, Evalue=8e-11,
Organism=Homo sapiens, GI116734696, Length=79, Percent_Identity=36.7088607594937, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17553656, Length=75, Percent_Identity=41.3333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17532167, Length=80, Percent_Identity=40, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=40.5063291139241, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=40.7894736842105, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI212648574, Length=87, Percent_Identity=41.3793103448276, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17569937, Length=87, Percent_Identity=41.3793103448276, Blast_Score=65, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17539498, Length=75, Percent_Identity=38.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=40.7894736842105, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17137710, Length=85, Percent_Identity=40, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11956; Mature: 11956

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERGNPIAVERRRFCVMSAKIYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSK
CCCCCCCEECCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GFGFVEMESAESAELVINELNEKEFEGRRLRVNYAEEKPRFPFKN
CCCEEEECCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MERGNPIAVERRRFCVMSAKIYVGNLNYATTEAGLASLFSQFGEVLSVAVIKDKLTQRSK
CCCCCCCEECCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GFGFVEMESAESAELVINELNEKEFEGRRLRVNYAEEKPRFPFKN
CCCEEEECCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]