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The map label for this gene is licC [H]

Identifier: 189025341

GI number: 189025341

Start: 120341

End: 121918

Strand: Reverse

Name: licC [H]

Synonym: TPASS_0107

Alternate gene names: 189025341

Gene position: 121918-120341 (Counterclockwise)

Preceding gene: 189025342

Following gene: 189025340

Centisome position: 10.7

GC content: 47.02

Gene sequence:

>1578_bases
ATGGCTGCAGGCTTTGGCTCCCGTTGCGTGCCTCTTACATACGCTACTCCAAAGGGCCTGCTGAAAGTCTTTGGTGAGCC
CATGATTGAGCGTCAAATTCGTCAGTTACACGAAGTCGGCATTACTGACATCACGGTCGTCGTCGGCTACCTCAAAGAGG
CCTTTGAGTACCTCGTCGACAAGCATGACGTGACGCTCACCTATAACCCTGACTATGAAACTGCCAACAACCTATCCACC
CTCTACCACGCCCGTCATTTACTTCGAAATACCTACATACTCTCAAGCGATAACTGGCTACGCGAAAACATTTATCACTC
CCATGAGTGGGATTCCTGGTATACGGCTGTCAAGACACAAGGGAAAACAAAGGAATGGGTGTTAAAAACCGGATTGTACG
ACAAAATTACCGCCGTGAAAATTGGTGGCAGAAGTGGGTGGATCATGTACGGTCCAGCTTACTTTTCTGCATCGTTTTCT
AAAAAGATCATCCCCCTCATCGAAGCTGCCTACATGCGCCCAGAAAACCGCGCGTGGTTCTGGGAAGACGTCTTTATGCG
CAATACAAAATCCCTTACCATGTTTGCCAACAAACAGGCTGACAACCTTATCTACGAATTTGAGTCGCTCGATGAGCTGC
GCAAGTTTGATTTTGCGTACATGGTTTCGAGCGATAACGAGTGGATGCGCGTCATTTCCCATGTTTTCAACCAACCCGAA
ATGACAATCGGTAAGCTGCGTCCACTTAAAGCAGGAATGACGAACAAATCTTTTATCTTTGAGCTGAATGATAAGCCGTA
CCTATTCAGAATTCCTGGAGAGGGTACCGAACTCCTTGTCAATCGCTTCCAAGAAGCTGCCGTGTATGAAGCAATTAAGC
CCCTTAATATTTGTGACACTCTCGTTCACCTTGAGCCTGCCCGTGGTATTAAAATCACCGTCTTCCACAAAGACTGCCGC
AGTGCAAACCCTAGTGATCCGGCAGACCTTGACTTGTGCATGAGGATTGCGCGCAAACTCCATCAATCAGGTATTTGTGT
TGCCCATAGGTTCGACTTCAGATCGCGTATTGCGTATTACGAAAAGCTTGCCCTCGACCAGTACAGTATTCTTTACGCTG
ACTATCGTTCAGTGAGAGAAAAAATGAATACACTCTTGGCTATTGTCGATTCAGTGGACAAACCGTGCGTACTTACGCAT
GTCGATCTAACCCCAGATAACTTCCTGCTTTGCGATGGCAGTGCCCAGCTCATCGATTGGGAATATGCGGGCATGTGTGA
TCCGCTTGTGGATATCGCGATGTTCTCTTTGTATGCCCACTTTAACACCGCCCAGATAGAAGATCTCATGTATCGTTATT
TTCAGCGTAATCCGCACGGAGAAGAGCGCCTGCGCGTCTTTTGCTATATTGCTCTTGGGGGATTTTTGTGGTCTTTGTGG
ACGAGCTACAAACAGGCGCTTGGTATCTCGTTTGGAGATTATGGACTGAAAATGTACCGATATGCAAAAGAATATTACGA
AGCAGTTCAGACGCTCCTGAAAACACATAGGGCAGATCATGCAGAAAGAAAAATGTGA

Upstream 100 bases:

>100_bases
ACTCCTTGAAACCCACGGGACCTTTGGTGCGCGGACGCGTTCTCTCACCCCCCTTGCACATAGTCAGTATCAGTCTTGCC
GGGTTCATAATGCGGTAATA

Downstream 100 bases:

>100_bases
CTTCAGCGTCTCTCTCATCCCATTGGGAATCGTGATCTCGTGCGCACTCCTATTTATTTCCTTTCCTGACATTTCTCATC
GGGTAATCGGTACCCTCTTG

Product: protein LicC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MAAGFGSRCVPLTYATPKGLLKVFGEPMIERQIRQLHEVGITDITVVVGYLKEAFEYLVDKHDVTLTYNPDYETANNLST
LYHARHLLRNTYILSSDNWLRENIYHSHEWDSWYTAVKTQGKTKEWVLKTGLYDKITAVKIGGRSGWIMYGPAYFSASFS
KKIIPLIEAAYMRPENRAWFWEDVFMRNTKSLTMFANKQADNLIYEFESLDELRKFDFAYMVSSDNEWMRVISHVFNQPE
MTIGKLRPLKAGMTNKSFIFELNDKPYLFRIPGEGTELLVNRFQEAAVYEAIKPLNICDTLVHLEPARGIKITVFHKDCR
SANPSDPADLDLCMRIARKLHQSGICVAHRFDFRSRIAYYEKLALDQYSILYADYRSVREKMNTLLAIVDSVDKPCVLTH
VDLTPDNFLLCDGSAQLIDWEYAGMCDPLVDIAMFSLYAHFNTAQIEDLMYRYFQRNPHGEERLRVFCYIALGGFLWSLW
TSYKQALGISFGDYGLKMYRYAKEYYEAVQTLLKTHRADHAERKM

Sequences:

>Translated_525_residues
MAAGFGSRCVPLTYATPKGLLKVFGEPMIERQIRQLHEVGITDITVVVGYLKEAFEYLVDKHDVTLTYNPDYETANNLST
LYHARHLLRNTYILSSDNWLRENIYHSHEWDSWYTAVKTQGKTKEWVLKTGLYDKITAVKIGGRSGWIMYGPAYFSASFS
KKIIPLIEAAYMRPENRAWFWEDVFMRNTKSLTMFANKQADNLIYEFESLDELRKFDFAYMVSSDNEWMRVISHVFNQPE
MTIGKLRPLKAGMTNKSFIFELNDKPYLFRIPGEGTELLVNRFQEAAVYEAIKPLNICDTLVHLEPARGIKITVFHKDCR
SANPSDPADLDLCMRIARKLHQSGICVAHRFDFRSRIAYYEKLALDQYSILYADYRSVREKMNTLLAIVDSVDKPCVLTH
VDLTPDNFLLCDGSAQLIDWEYAGMCDPLVDIAMFSLYAHFNTAQIEDLMYRYFQRNPHGEERLRVFCYIALGGFLWSLW
TSYKQALGISFGDYGLKMYRYAKEYYEAVQTLLKTHRADHAERKM
>Mature_524_residues
AAGFGSRCVPLTYATPKGLLKVFGEPMIERQIRQLHEVGITDITVVVGYLKEAFEYLVDKHDVTLTYNPDYETANNLSTL
YHARHLLRNTYILSSDNWLRENIYHSHEWDSWYTAVKTQGKTKEWVLKTGLYDKITAVKIGGRSGWIMYGPAYFSASFSK
KIIPLIEAAYMRPENRAWFWEDVFMRNTKSLTMFANKQADNLIYEFESLDELRKFDFAYMVSSDNEWMRVISHVFNQPEM
TIGKLRPLKAGMTNKSFIFELNDKPYLFRIPGEGTELLVNRFQEAAVYEAIKPLNICDTLVHLEPARGIKITVFHKDCRS
ANPSDPADLDLCMRIARKLHQSGICVAHRFDFRSRIAYYEKLALDQYSILYADYRSVREKMNTLLAIVDSVDKPCVLTHV
DLTPDNFLLCDGSAQLIDWEYAGMCDPLVDIAMFSLYAHFNTAQIEDLMYRYFQRNPHGEERLRVFCYIALGGFLWSLWT
SYKQALGISFGDYGLKMYRYAKEYYEAVQTLLKTHRADHAERKM

Specific function: Unknown

COG id: COG0510

COG function: function code M; Predicted choline kinase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017189
- InterPro:   IPR005835 [H]

Pfam domain/function: PF00483 NTP_transferase [H]

EC number: NA

Molecular weight: Translated: 61045; Mature: 60914

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS00109 PROTEIN_KINASE_TYR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGFGSRCVPLTYATPKGLLKVFGEPMIERQIRQLHEVGITDITVVVGYLKEAFEYLVD
CCCCCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
KHDVTLTYNPDYETANNLSTLYHARHLLRNTYILSSDNWLRENIYHSHEWDSWYTAVKTQ
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCEEECCCCHHHHHCCCCCCCCHHHHHHHCC
GKTKEWVLKTGLYDKITAVKIGGRSGWIMYGPAYFSASFSKKIIPLIEAAYMRPENRAWF
CCCHHHHHHCCCCCCEEEEEECCCCCEEEECHHHHCCCHHHHHHHHHHHHHCCCCCCCEE
WEDVFMRNTKSLTMFANKQADNLIYEFESLDELRKFDFAYMVSSDNEWMRVISHVFNQPE
HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCC
MTIGKLRPLKAGMTNKSFIFELNDKPYLFRIPGEGTELLVNRFQEAAVYEAIKPLNICDT
CCHHCCCCHHCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHH
LVHLEPARGIKITVFHKDCRSANPSDPADLDLCMRIARKLHQSGICVAHRFDFRSRIAYY
HHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
EKLALDQYSILYADYRSVREKMNTLLAIVDSVDKPCVLTHVDLTPDNFLLCDGSAQLIDW
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCEEEE
EYAGMCDPLVDIAMFSLYAHFNTAQIEDLMYRYFQRNPHGEERLRVFCYIALGGFLWSLW
HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHEEEHHHHHHHHHHHHHH
TSYKQALGISFGDYGLKMYRYAKEYYEAVQTLLKTHRADHAERKM
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure 
AAGFGSRCVPLTYATPKGLLKVFGEPMIERQIRQLHEVGITDITVVVGYLKEAFEYLVD
CCCCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
KHDVTLTYNPDYETANNLSTLYHARHLLRNTYILSSDNWLRENIYHSHEWDSWYTAVKTQ
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCEEECCCCHHHHHCCCCCCCCHHHHHHHCC
GKTKEWVLKTGLYDKITAVKIGGRSGWIMYGPAYFSASFSKKIIPLIEAAYMRPENRAWF
CCCHHHHHHCCCCCCEEEEEECCCCCEEEECHHHHCCCHHHHHHHHHHHHHCCCCCCCEE
WEDVFMRNTKSLTMFANKQADNLIYEFESLDELRKFDFAYMVSSDNEWMRVISHVFNQPE
HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCC
MTIGKLRPLKAGMTNKSFIFELNDKPYLFRIPGEGTELLVNRFQEAAVYEAIKPLNICDT
CCHHCCCCHHCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHH
LVHLEPARGIKITVFHKDCRSANPSDPADLDLCMRIARKLHQSGICVAHRFDFRSRIAYY
HHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
EKLALDQYSILYADYRSVREKMNTLLAIVDSVDKPCVLTHVDLTPDNFLLCDGSAQLIDW
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCEEEE
EYAGMCDPLVDIAMFSLYAHFNTAQIEDLMYRYFQRNPHGEERLRVFCYIALGGFLWSLW
HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHEEEHHHHHHHHHHHHHH
TSYKQALGISFGDYGLKMYRYAKEYYEAVQTLLKTHRADHAERKM
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800 [H]