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The map label for this gene is y4oR [C]

Identifier: 189025310

GI number: 189025310

Start: 83389

End: 84210

Strand: Direct

Name: y4oR [C]

Synonym: TPASS_0076

Alternate gene names: 189025310

Gene position: 83389-84210 (Clockwise)

Preceding gene: 189025309

Following gene: 189025311

Centisome position: 7.32

GC content: 48.42

Gene sequence:

>822_bases
ATGAACATGATTTTTTTGAAGTGGCGTACCGCGTTGGTGTTGTGTCTGTTAAGCTGTATTGCGTTGGTGAGTATGTTCCC
TCTCTATGAAATGGTAGCTACTTCTTTGAAGCGTGATGCGGACGCATTTCGGTTGCCGCCAGCATGGTTTTTTATACCAA
CAATTGAAAACTATCGGCAACTCTTGCAGGAACATCATTTTGGACGTGCCCTGTATAACAGCTTGGTGGTGACGTTGAGT
TCCACGGTGGTGAGTGTCAGTGCAGGGGCTGCAGCAGCGTATGCAATGCAGCGCTTTCGGTACCGAGGTAAAAAGGCAAT
CACGGTGGCGTTGTTGCTCTTGCGAGTGATTCCGCCGGTTGTGCTTGTAATTCCTATCTTTGTGTGGTGGACTGCGCTCG
GGTTAGTGAATTCTTTAGCAGGACTTGCGCTCGTGTATGGTGCGCTCAATGTTCCATTTAATGTGTGGGTAATCACTACC
TTTGTTGCGGAAATTCCCCCTTCGCTGGATGAATCTGCAAAATTGGATGGATGTTCTCACTGGATGATTTTTACCCGCAT
TGTGATGCCACTGATTACACCCGCACTTGCGGTGGTGAGTATTTTTACATTTCGTTTTGCATGGAATGAGTATATGCTTG
GATTTGCGCTGACCAATCGGAAAACACGGACACTGCCGGTGGCACTTTCACTTTTTCTCACGGATAGTGGTGTCGAATGG
GGGCGGATTACCGCAGCAGCAACGCTGATTGCAATTCCTGCATGTGTTTTTACCTTTGCGGCGGCGAAGTACTTGGTGGT
GGGTTTGACCGCAGTGCGGTAA

Upstream 100 bases:

>100_bases
CCTGACAAGTCTTTTGACTTGTATTTTCATTCTCCTTACGATGAGGAGACAGGCGCGGTGAGGGTTGCGTACGGGTTAGA
TAAGAGCAGGAGCAGATAGC

Downstream 100 bases:

>100_bases
AGGGATAAACACTCTGCGCGGGTGAGTACGTGCAGCAGATATGTGCGGCGCATCCCTGGGAGACTGCGTCGGGTCGTGTG
CGCGTGTCAATGCGTTGTAT

Product: sugar ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MNMIFLKWRTALVLCLLSCIALVSMFPLYEMVATSLKRDADAFRLPPAWFFIPTIENYRQLLQEHHFGRALYNSLVVTLS
STVVSVSAGAAAAYAMQRFRYRGKKAITVALLLLRVIPPVVLVIPIFVWWTALGLVNSLAGLALVYGALNVPFNVWVITT
FVAEIPPSLDESAKLDGCSHWMIFTRIVMPLITPALAVVSIFTFRFAWNEYMLGFALTNRKTRTLPVALSLFLTDSGVEW
GRITAAATLIAIPACVFTFAAAKYLVVGLTAVR

Sequences:

>Translated_273_residues
MNMIFLKWRTALVLCLLSCIALVSMFPLYEMVATSLKRDADAFRLPPAWFFIPTIENYRQLLQEHHFGRALYNSLVVTLS
STVVSVSAGAAAAYAMQRFRYRGKKAITVALLLLRVIPPVVLVIPIFVWWTALGLVNSLAGLALVYGALNVPFNVWVITT
FVAEIPPSLDESAKLDGCSHWMIFTRIVMPLITPALAVVSIFTFRFAWNEYMLGFALTNRKTRTLPVALSLFLTDSGVEW
GRITAAATLIAIPACVFTFAAAKYLVVGLTAVR
>Mature_273_residues
MNMIFLKWRTALVLCLLSCIALVSMFPLYEMVATSLKRDADAFRLPPAWFFIPTIENYRQLLQEHHFGRALYNSLVVTLS
STVVSVSAGAAAAYAMQRFRYRGKKAITVALLLLRVIPPVVLVIPIFVWWTALGLVNSLAGLALVYGALNVPFNVWVITT
FVAEIPPSLDESAKLDGCSHWMIFTRIVMPLITPALAVVSIFTFRFAWNEYMLGFALTNRKTRTLPVALSLFLTDSGVEW
GRITAAATLIAIPACVFTFAAAKYLVVGLTAVR

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=263, Percent_Identity=30.4182509505703, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790464, Length=208, Percent_Identity=30.7692307692308, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1789860, Length=272, Percent_Identity=26.4705882352941, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30254; Mature: 30254

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMIFLKWRTALVLCLLSCIALVSMFPLYEMVATSLKRDADAFRLPPAWFFIPTIENYRQ
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCEEEECCHHHHHH
LLQEHHFGRALYNSLVVTLSSTVVSVSAGAAAAYAMQRFRYRGKKAITVALLLLRVIPPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VLVIPIFVWWTALGLVNSLAGLALVYGALNVPFNVWVITTFVAEIPPSLDESAKLDGCSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
WMIFTRIVMPLITPALAVVSIFTFRFAWNEYMLGFALTNRKTRTLPVALSLFLTDSGVEW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEECCCCCH
GRITAAATLIAIPACVFTFAAAKYLVVGLTAVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNMIFLKWRTALVLCLLSCIALVSMFPLYEMVATSLKRDADAFRLPPAWFFIPTIENYRQ
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCEEEECCHHHHHH
LLQEHHFGRALYNSLVVTLSSTVVSVSAGAAAAYAMQRFRYRGKKAITVALLLLRVIPPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VLVIPIFVWWTALGLVNSLAGLALVYGALNVPFNVWVITTFVAEIPPSLDESAKLDGCSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
WMIFTRIVMPLITPALAVVSIFTFRFAWNEYMLGFALTNRKTRTLPVALSLFLTDSGVEW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEECCCCCH
GRITAAATLIAIPACVFTFAAAKYLVVGLTAVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]