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The map label for this gene is gcdB [H]

Identifier: 188586118

GI number: 188586118

Start: 1563114

End: 1564226

Strand: Direct

Name: gcdB [H]

Synonym: Nther_1492

Alternate gene names: 188586118

Gene position: 1563114-1564226 (Clockwise)

Preceding gene: 188586117

Following gene: 188586119

Centisome position: 49.38

GC content: 39.89

Gene sequence:

>1113_bases
GTGGTATTCGAGCAAATTGGAAATTTTTTAGAAACGACGGCCTTTTACAATGTCTCTTTTGATCAATTGATCATGATTGT
TATTGCCTTATTTTTATTATACCTAGCTATTGCTAAAAGATATGAGCCCCTATTATTGGTACCTATCAGCTTCGGGATGT
TACTAGTTAATATTCCACAAGGGGATATCATGGACCCGGGTGGATTATTGTATTATTTATATCAACCTGTTGATTGGGGA
GTATATCCCCCCTTAATTTTCTTAGGTGTAGGGGCTATGACGGACTTTGGTCCTTTAATAGCTAATCCCAAAACCTTTTT
ACTAGGAGCTGCCGCCCAATTTGGAATTTTCATTACTTTCTTGGGTGCACTAGGGTTAGGCTTCACCCCTCAAGAGGCAG
GTTCTATAGGAATTATCGGGGGAGCAGATGGTCCAACTGCTATTTTCTTAACAAGCCAATTGGCTCCTGAGTTATTGGGA
TCTGTTGCAATTGCCGCTTATGCATATATGGCCTTAGTACCAATAATCCAGCCACCCATAATGAAAGCTCTAACGAATGA
AGAAGAACGACAAATAGTTATGGAACAGCTTAGACCAGTAAGCAAAAGAGAACGAATCTTATTTCCCATTATTGTGTTCA
TTTTGACTTCATTCTTGATTCCTTCAGCTATACCTTTACTTGGAATGTTAATGTTTGGTAATCTATTAAAAGAGTGTGGA
GTTACTGATAGATTAAGTAATGCAGCTCAAAATGAATTAAACAACATAGTAGTCATTTTCTTAGGCCTAACTGTGGGAGC
TACAGCAGATGCTGGTAGTTTTTTAAGGTTACAAACTATTGGTATAATAGGTCTGGGCTTAGGAGCTTTTGCAGTAGGAA
CTGCCGTTGGGGTATTACTTGGAAAATTAATGTGCAAGTTAACGGGAGGTAAAATTAATCCATTGATTGGCTCTGCAGGA
GTGTCCGCTGTTCCCATGGCTGCACGAGTTTCACAAAGCGTGGGCAGAGAAGCCAATCCTAATAATTTCTTGTTAATGCA
TGCGATGGGACCTAATGTGGCTGGTGTTATCGGTTCAGCCATTGCCGCTGGTTTATTACTAGCCATGCTGTAA

Upstream 100 bases:

>100_bases
AGACAGCCCAGGTAAAGTTAAAGAAGTTAGAGTCAACAAAGGGGCCACGGTGAATTCAGGCGACACTTTAATAGTGTTAG
AGTAGAGAGGGGGAATAATC

Downstream 100 bases:

>100_bases
ATTAAATCATTATAATATGCATAGTTATAACCACCTGGCTATACATTATGTTATGAGTAGAATTTTTATAGCCGGGTGGT
TTTATATGTTTAAAAAGTAT

Product: glutaconyl-CoA decarboxylase beta subunit

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MVFEQIGNFLETTAFYNVSFDQLIMIVIALFLLYLAIAKRYEPLLLVPISFGMLLVNIPQGDIMDPGGLLYYLYQPVDWG
VYPPLIFLGVGAMTDFGPLIANPKTFLLGAAAQFGIFITFLGALGLGFTPQEAGSIGIIGGADGPTAIFLTSQLAPELLG
SVAIAAYAYMALVPIIQPPIMKALTNEEERQIVMEQLRPVSKRERILFPIIVFILTSFLIPSAIPLLGMLMFGNLLKECG
VTDRLSNAAQNELNNIVVIFLGLTVGATADAGSFLRLQTIGIIGLGLGAFAVGTAVGVLLGKLMCKLTGGKINPLIGSAG
VSAVPMAARVSQSVGREANPNNFLLMHAMGPNVAGVIGSAIAAGLLLAML

Sequences:

>Translated_370_residues
MVFEQIGNFLETTAFYNVSFDQLIMIVIALFLLYLAIAKRYEPLLLVPISFGMLLVNIPQGDIMDPGGLLYYLYQPVDWG
VYPPLIFLGVGAMTDFGPLIANPKTFLLGAAAQFGIFITFLGALGLGFTPQEAGSIGIIGGADGPTAIFLTSQLAPELLG
SVAIAAYAYMALVPIIQPPIMKALTNEEERQIVMEQLRPVSKRERILFPIIVFILTSFLIPSAIPLLGMLMFGNLLKECG
VTDRLSNAAQNELNNIVVIFLGLTVGATADAGSFLRLQTIGIIGLGLGAFAVGTAVGVLLGKLMCKLTGGKINPLIGSAG
VSAVPMAARVSQSVGREANPNNFLLMHAMGPNVAGVIGSAIAAGLLLAML
>Mature_370_residues
MVFEQIGNFLETTAFYNVSFDQLIMIVIALFLLYLAIAKRYEPLLLVPISFGMLLVNIPQGDIMDPGGLLYYLYQPVDWG
VYPPLIFLGVGAMTDFGPLIANPKTFLLGAAAQFGIFITFLGALGLGFTPQEAGSIGIIGGADGPTAIFLTSQLAPELLG
SVAIAAYAYMALVPIIQPPIMKALTNEEERQIVMEQLRPVSKRERILFPIIVFILTSFLIPSAIPLLGMLMFGNLLKECG
VTDRLSNAAQNELNNIVVIFLGLTVGATADAGSFLRLQTIGIIGLGLGAFAVGTAVGVLLGKLMCKLTGGKINPLIGSAG
VSAVPMAARVSQSVGREANPNNFLLMHAMGPNVAGVIGSAIAAGLLLAML

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 39015; Mature: 39015

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFEQIGNFLETTAFYNVSFDQLIMIVIALFLLYLAIAKRYEPLLLVPISFGMLLVNIPQ
CCHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCC
GDIMDPGGLLYYLYQPVDWGVYPPLIFLGVGAMTDFGPLIANPKTFLLGAAAQFGIFITF
CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHCCCHHHEEEHHHHHHHHHHH
LGALGLGFTPQEAGSIGIIGGADGPTAIFLTSQLAPELLGSVAIAAYAYMALVPIIQPPI
HHHHCCCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
MKALTNEEERQIVMEQLRPVSKRERILFPIIVFILTSFLIPSAIPLLGMLMFGNLLKECG
HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VTDRLSNAAQNELNNIVVIFLGLTVGATADAGSFLRLQTIGIIGLGLGAFAVGTAVGVLL
CHHHHHHHHHHHHCCEEEEEEECHHCCCCCCCCEEEHEEHHHHHHHHHHHHHHHHHHHHH
GKLMCKLTGGKINPLIGSAGVSAVPMAARVSQSVGREANPNNFLLMHAMGPNVAGVIGSA
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHH
IAAGLLLAML
HHHHHHHHHC
>Mature Secondary Structure
MVFEQIGNFLETTAFYNVSFDQLIMIVIALFLLYLAIAKRYEPLLLVPISFGMLLVNIPQ
CCHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCC
GDIMDPGGLLYYLYQPVDWGVYPPLIFLGVGAMTDFGPLIANPKTFLLGAAAQFGIFITF
CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHCCCHHHEEEHHHHHHHHHHH
LGALGLGFTPQEAGSIGIIGGADGPTAIFLTSQLAPELLGSVAIAAYAYMALVPIIQPPI
HHHHCCCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
MKALTNEEERQIVMEQLRPVSKRERILFPIIVFILTSFLIPSAIPLLGMLMFGNLLKECG
HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VTDRLSNAAQNELNNIVVIFLGLTVGATADAGSFLRLQTIGIIGLGLGAFAVGTAVGVLL
CHHHHHHHHHHHHCCEEEEEEECHHCCCCCCCCEEEHEEHHHHHHHHHHHHHHHHHHHHH
GKLMCKLTGGKINPLIGSAGVSAVPMAARVSQSVGREANPNNFLLMHAMGPNVAGVIGSA
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHH
IAAGLLLAML
HHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]