Click here to switch to the map view.

The map label for this gene is ydjZ [C]

Identifier: 188585500

GI number: 188585500

Start: 920604

End: 921251

Strand: Reverse

Name: ydjZ [C]

Synonym: Nther_0872

Alternate gene names: 188585500

Gene position: 921251-920604 (Counterclockwise)

Preceding gene: 188585501

Following gene: 188585498

Centisome position: 29.1

GC content: 32.56

Gene sequence:

>648_bases
ATGACTATCCTGAGAATAATTATAGTTTTGTTAATAGGAGTGGGAACAGGCAGCTATTATTTATATCTTAATGATATAAT
CACAGCTGAAAATATCTACTTATTTCTTGAAAATTACGCTTATTTAGCACCTTTATTATATTTTCTTATCCATGTCATTC
GTCCTTTTACCATGTTACCATCTTCTATCCTATCAGTAGTTGCTGGTCTCACCTTTGGTTCCTGGATCGGATTTTTAATT
TGTATTACCGGTTTCTTACTGGGAACATCAACTGCTTATATTATGGGAAAAGTTTTTCAACTCAAGTGGCTAATCTCTCG
CTATCCCCAGAGCCAACAACTTATCCAGGTACTTAAAGAAAATTCCACTGATAATATCCTACTGGGAATCAGTTTAAGAT
TTGTGCCAATTTTCCCTTCAGATTTAGTTAGCTTTGCCTTTGGAGTTTGTAAAATAAGATATCGAGAATTTGCTCTAGGA
ACCTTAATAGGATCATTTCCGGGACTATTTATGTTTTATTATGCTGGAATTCAGTTTCAACAGCAAAGCTATTTTAATCT
AATCTTGATTTTAATCGCATTTGTTATCCTCACCTTGATATTTTGGAAAAAGAAACAATATTATAAAGAAAAGTTTGGTA
TAAAGTAG

Upstream 100 bases:

>100_bases
TTTTTTAGAGCTTGTATTCCCCATATCCTTAAAGTATACTAAGATTTAAAGAAATTCTTGTTAGAAAGATCAAACTATAA
CACCGAGACGAGGTGTTAAT

Downstream 100 bases:

>100_bases
GTGAAAATTGATATTTGGTTTCCAGATACTAACTTTCCAAACTTCATTCTTCTTTGTCCTCATCTCTTTTTCCCGGCATA
AAAGGTCCTAATAATCTGAT

Product: SNARE associated Golgi protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTILRIIIVLLIGVGTGSYYLYLNDIITAENIYLFLENYAYLAPLLYFLIHVIRPFTMLPSSILSVVAGLTFGSWIGFLI
CITGFLLGTSTAYIMGKVFQLKWLISRYPQSQQLIQVLKENSTDNILLGISLRFVPIFPSDLVSFAFGVCKIRYREFALG
TLIGSFPGLFMFYYAGIQFQQQSYFNLILILIAFVILTLIFWKKKQYYKEKFGIK

Sequences:

>Translated_215_residues
MTILRIIIVLLIGVGTGSYYLYLNDIITAENIYLFLENYAYLAPLLYFLIHVIRPFTMLPSSILSVVAGLTFGSWIGFLI
CITGFLLGTSTAYIMGKVFQLKWLISRYPQSQQLIQVLKENSTDNILLGISLRFVPIFPSDLVSFAFGVCKIRYREFALG
TLIGSFPGLFMFYYAGIQFQQQSYFNLILILIAFVILTLIFWKKKQYYKEKFGIK
>Mature_214_residues
TILRIIIVLLIGVGTGSYYLYLNDIITAENIYLFLENYAYLAPLLYFLIHVIRPFTMLPSSILSVVAGLTFGSWIGFLIC
ITGFLLGTSTAYIMGKVFQLKWLISRYPQSQQLIQVLKENSTDNILLGISLRFVPIFPSDLVSFAFGVCKIRYREFALGT
LIGSFPGLFMFYYAGIQFQQQSYFNLILILIAFVILTLIFWKKKQYYKEKFGIK

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24682; Mature: 24551

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILRIIIVLLIGVGTGSYYLYLNDIITAENIYLFLENYAYLAPLLYFLIHVIRPFTMLP
CHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSILSVVAGLTFGSWIGFLICITGFLLGTSTAYIMGKVFQLKWLISRYPQSQQLIQVLKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
NSTDNILLGISLRFVPIFPSDLVSFAFGVCKIRYREFALGTLIGSFPGLFMFYYAGIQFQ
CCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
QQSYFNLILILIAFVILTLIFWKKKQYYKEKFGIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TILRIIIVLLIGVGTGSYYLYLNDIITAENIYLFLENYAYLAPLLYFLIHVIRPFTMLP
HHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSILSVVAGLTFGSWIGFLICITGFLLGTSTAYIMGKVFQLKWLISRYPQSQQLIQVLKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
NSTDNILLGISLRFVPIFPSDLVSFAFGVCKIRYREFALGTLIGSFPGLFMFYYAGIQFQ
CCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
QQSYFNLILILIAFVILTLIFWKKKQYYKEKFGIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]