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The map label for this gene is rtcB [C]

Identifier: 188584797

GI number: 188584797

Start: 179217

End: 180605

Strand: Direct

Name: rtcB [C]

Synonym: Nther_0155

Alternate gene names: 188584797

Gene position: 179217-180605 (Clockwise)

Preceding gene: 188584796

Following gene: 188584799

Centisome position: 5.66

GC content: 38.23

Gene sequence:

>1389_bases
ATGAAGAAGAATGATTTTAAAATGACAGAACAGAATATTTATTCATATATGTCCCCCGATAATATTAAAGTGGAGGTGTT
TTTATCACCTCTATTATTTGAGTACTTAGAAGAGAGTTCGTTAAAACAGTTGTTAGATGCCAGTGAGTTACCTGGTGTGA
TTCCACCTGTGATAGGAATGCCTGATATCCATGAGGGTTTTGGATTACCTATCGGTGGAGTGTTAGCAACTGATGGTAAT
GACGGTATAATATCGGCAGGGGCAGTGGGGATGGATATTAACTGTGGTGTTAGGCTGATAAATACAGACATTGATTATGG
AGATATTAAGGACGAGCTTCCCAAGTTATTGGAAAAAATCACTTCATCGGTTTCTCCTGGAGTCGGTGGTAAAACAAAAT
ACTTAAAAGCAAAAAGCTTGGATATCCAAAATGTATTGGAACAGGGCGTGCCTTATTTGATTCGTCAGGGCTTTGGTAAT
ATGGAGGATTTAGATCACATTGAAGATGGTGGTGTTATATCAGAAGGAGACAGCTCTGTTCTGAGTCATGAAGCTGTTAA
GAGGGCTAAAGAGCAACTTGCTACTCTAGGTTCTGGGAATCATTTCATTGAAATCTGCTTGCTTGAAACTGATTTTAATC
AAAAAGAAGCCAATGATTTAGGAATTAATTACGGGAAGGTTTGCTTTTTAATTCATACAGGTAGTAGAGGGATCGGGCAT
CAAGTTTGTACGGAATATATGGACAGAATGAAAAAAGCCTTAAAAAAAGATAGACAGCCACTTCCAACAAAAGGGCTAGC
CTATGCCGAAATTAAGAGCCCTTTAGGTAGAGAATACTTTAGTGCTATGGCAGCTGCAAGTAATTTTGCTTTTGCTAATA
GACAGCTATTGACGACAGCTATAGAAGAAGCCATTGGTTGCAAAACGAATTTAATTTACGATGTTCCCCATAATATAGCT
AAGTTCGAAACAATAGATAATCAAAAATTACTTGTACACAGAAAAGGAGCTACTAGAGCTTTCCCGGCAGGTCACTCTGC
CTTAGCTAAAAAATTCAAAAACACGGGACAACCAGTCATTATCCCAGGAACTATGGGTACCGGATCTTATATTATGCTTG
GTACAGAAAATCTGAGACGTACATTTTATTCGGTCAATCATGGAGCGGGTCGTCAGCTATCAAGAAAGCAGGCCAAAAAA
AGTATCACCAAAAAACAATTCAAACAAATGATGAATGGGATAGAAATGAGTATACCGGGGGTTAAAAATGTAATAGATGA
GGCTCCTCAAGCTTATAAAGATGTTGATGAAGTGGTTAATACTCTTTGCGATATCGGTTTAACTAAAAAAATAGCCAGGT
TGCGCCCCATCGGTGTGATAAAAGGTTAA

Upstream 100 bases:

>100_bases
GATTCATTTACACCAAAGGCAGTTATTATGGAAACACCAAAAAATGGTACAGACTGTGACCAAATAAACTTACAACGATT
AAAAAAGGTGGTTGGCAGGC

Downstream 100 bases:

>100_bases
TATCAAGGGCCAGGGGCGACCTGGCTTTTTATTTATTTTAATAACTCCTCAGAGTTCATCTTGTAGTTTTACTCAAAGAT
TTCTACAAGTATCTCTCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MKKNDFKMTEQNIYSYMSPDNIKVEVFLSPLLFEYLEESSLKQLLDASELPGVIPPVIGMPDIHEGFGLPIGGVLATDGN
DGIISAGAVGMDINCGVRLINTDIDYGDIKDELPKLLEKITSSVSPGVGGKTKYLKAKSLDIQNVLEQGVPYLIRQGFGN
MEDLDHIEDGGVISEGDSSVLSHEAVKRAKEQLATLGSGNHFIEICLLETDFNQKEANDLGINYGKVCFLIHTGSRGIGH
QVCTEYMDRMKKALKKDRQPLPTKGLAYAEIKSPLGREYFSAMAAASNFAFANRQLLTTAIEEAIGCKTNLIYDVPHNIA
KFETIDNQKLLVHRKGATRAFPAGHSALAKKFKNTGQPVIIPGTMGTGSYIMLGTENLRRTFYSVNHGAGRQLSRKQAKK
SITKKQFKQMMNGIEMSIPGVKNVIDEAPQAYKDVDEVVNTLCDIGLTKKIARLRPIGVIKG

Sequences:

>Translated_462_residues
MKKNDFKMTEQNIYSYMSPDNIKVEVFLSPLLFEYLEESSLKQLLDASELPGVIPPVIGMPDIHEGFGLPIGGVLATDGN
DGIISAGAVGMDINCGVRLINTDIDYGDIKDELPKLLEKITSSVSPGVGGKTKYLKAKSLDIQNVLEQGVPYLIRQGFGN
MEDLDHIEDGGVISEGDSSVLSHEAVKRAKEQLATLGSGNHFIEICLLETDFNQKEANDLGINYGKVCFLIHTGSRGIGH
QVCTEYMDRMKKALKKDRQPLPTKGLAYAEIKSPLGREYFSAMAAASNFAFANRQLLTTAIEEAIGCKTNLIYDVPHNIA
KFETIDNQKLLVHRKGATRAFPAGHSALAKKFKNTGQPVIIPGTMGTGSYIMLGTENLRRTFYSVNHGAGRQLSRKQAKK
SITKKQFKQMMNGIEMSIPGVKNVIDEAPQAYKDVDEVVNTLCDIGLTKKIARLRPIGVIKG
>Mature_462_residues
MKKNDFKMTEQNIYSYMSPDNIKVEVFLSPLLFEYLEESSLKQLLDASELPGVIPPVIGMPDIHEGFGLPIGGVLATDGN
DGIISAGAVGMDINCGVRLINTDIDYGDIKDELPKLLEKITSSVSPGVGGKTKYLKAKSLDIQNVLEQGVPYLIRQGFGN
MEDLDHIEDGGVISEGDSSVLSHEAVKRAKEQLATLGSGNHFIEICLLETDFNQKEANDLGINYGKVCFLIHTGSRGIGH
QVCTEYMDRMKKALKKDRQPLPTKGLAYAEIKSPLGREYFSAMAAASNFAFANRQLLTTAIEEAIGCKTNLIYDVPHNIA
KFETIDNQKLLVHRKGATRAFPAGHSALAKKFKNTGQPVIIPGTMGTGSYIMLGTENLRRTFYSVNHGAGRQLSRKQAKK
SITKKQFKQMMNGIEMSIPGVKNVIDEAPQAYKDVDEVVNTLCDIGLTKKIARLRPIGVIKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=481, Percent_Identity=40.7484407484407, Blast_Score=344, Evalue=8e-95,
Organism=Escherichia coli, GI2367224, Length=470, Percent_Identity=29.7872340425532, Blast_Score=167, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17506665, Length=442, Percent_Identity=40.7239819004525, Blast_Score=317, Evalue=9e-87,
Organism=Drosophila melanogaster, GI24585217, Length=441, Percent_Identity=41.0430839002268, Blast_Score=308, Evalue=4e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 50567; Mature: 50567

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNDFKMTEQNIYSYMSPDNIKVEVFLSPLLFEYLEESSLKQLLDASELPGVIPPVIGM
CCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDIHEGFGLPIGGVLATDGNDGIISAGAVGMDINCGVRLINTDIDYGDIKDELPKLLEKI
CCCCCCCCCCCCCEEEECCCCCEEECCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHH
TSSVSPGVGGKTKYLKAKSLDIQNVLEQGVPYLIRQGFGNMEDLDHIEDGGVISEGDSSV
HHHCCCCCCCCCCEEEECCCCHHHHHHCCCHHHHHHCCCCHHHHHHCCCCCEECCCCHHH
LSHEAVKRAKEQLATLGSGNHFIEICLLETDFNQKEANDLGINYGKVCFLIHTGSRGIGH
HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHCCCCCCCEEEEEECCCCCCHH
QVCTEYMDRMKKALKKDRQPLPTKGLAYAEIKSPLGREYFSAMAAASNFAFANRQLLTTA
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEEAIGCKTNLIYDVPHNIAKFETIDNQKLLVHRKGATRAFPAGHSALAKKFKNTGQPVI
HHHHHCCCCCEEEECCCCHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEE
IPGTMGTGSYIMLGTENLRRTFYSVNHGAGRQLSRKQAKKSITKKQFKQMMNGIEMSIPG
EECCCCCCCEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCH
VKNVIDEAPQAYKDVDEVVNTLCDIGLTKKIARLRPIGVIKG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKNDFKMTEQNIYSYMSPDNIKVEVFLSPLLFEYLEESSLKQLLDASELPGVIPPVIGM
CCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDIHEGFGLPIGGVLATDGNDGIISAGAVGMDINCGVRLINTDIDYGDIKDELPKLLEKI
CCCCCCCCCCCCCEEEECCCCCEEECCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHH
TSSVSPGVGGKTKYLKAKSLDIQNVLEQGVPYLIRQGFGNMEDLDHIEDGGVISEGDSSV
HHHCCCCCCCCCCEEEECCCCHHHHHHCCCHHHHHHCCCCHHHHHHCCCCCEECCCCHHH
LSHEAVKRAKEQLATLGSGNHFIEICLLETDFNQKEANDLGINYGKVCFLIHTGSRGIGH
HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHCCCCCCCEEEEEECCCCCCHH
QVCTEYMDRMKKALKKDRQPLPTKGLAYAEIKSPLGREYFSAMAAASNFAFANRQLLTTA
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEEAIGCKTNLIYDVPHNIAKFETIDNQKLLVHRKGATRAFPAGHSALAKKFKNTGQPVI
HHHHHCCCCCEEEECCCCHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEE
IPGTMGTGSYIMLGTENLRRTFYSVNHGAGRQLSRKQAKKSITKKQFKQMMNGIEMSIPG
EECCCCCCCEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCH
VKNVIDEAPQAYKDVDEVVNTLCDIGLTKKIARLRPIGVIKG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA