| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528377
Identifier: 188528377
GI number: 188528377
Start: 1606736
End: 1606873
Strand: Reverse
Name: 188528377
Synonym: HPSH_08265
Alternate gene names: NA
Gene position: 1606873-1606736 (Counterclockwise)
Preceding gene: 188528378
Following gene: 188528372
Centisome position: 99.9
GC content: 29.71
Gene sequence:
>138_bases ATGTCATACAAATACGATAGCGATTTGGAATTTTTAAAGCGATTAAGCTCTAGCGATTTGAAAGATTTGTTTGATGTGCT TGTTTATGCCGAAGATAGTCAAAAAAGAGTTAATGAATACTTAACATATTCAGAATAA
Upstream 100 bases:
>100_bases CTAATCACTAATCACTAATCACTAATCACTAATCACTAATCACTAAAAAGGGGGTTGGTGGGATTTGAGCGAGCGATAGA AGTAAAATTAAAGGAATTGC
Downstream 100 bases:
>100_bases TACAAAAAACATGGCGACAATTATGCTCAATACACAGAAAGGATCGCTGAAGAGTTGCAATACTATGGGGGCAATAGTTT TGCGAATTTGTTTAGAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 45; Mature: 44
Protein sequence:
>45_residues MSYKYDSDLEFLKRLSSSDLKDLFDVLVYAEDSQKRVNEYLTYSE
Sequences:
>Translated_45_residues MSYKYDSDLEFLKRLSSSDLKDLFDVLVYAEDSQKRVNEYLTYSE >Mature_44_residues SYKYDSDLEFLKRLSSSDLKDLFDVLVYAEDSQKRVNEYLTYSE
Specific function: Unknown
COG id: COG4735
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 5405; Mature: 5274
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYKYDSDLEFLKRLSSSDLKDLFDVLVYAEDSQKRVNEYLTYSE CCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC >Mature Secondary Structure SYKYDSDLEFLKRLSSSDLKDLFDVLVYAEDSQKRVNEYLTYSE CCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA