| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528235
Identifier: 188528235
GI number: 188528235
Start: 1454049
End: 1454726
Strand: Reverse
Name: 188528235
Synonym: HPSH_07495
Alternate gene names: NA
Gene position: 1454726-1454049 (Counterclockwise)
Preceding gene: 188528236
Following gene: 188528234
Centisome position: 90.44
GC content: 40.71
Gene sequence:
>678_bases ATGAGAGCTACGGCGATAAAAATCTTTTCACTCTCATCAGCATTAGCCCTATTGCTTCAGGGTTGCTTGAGCATCAATTT AAAACAAATGCTACCAGAGATCAGAACTTATGATTTGAATGCGAGTTCTTTTGAAATCACGCAATGCCCTAAACCTTTGA CTGAAGTGAGGCTCATTAGTATTTTGAGTGCGGATTTATTCAACACTAAAGAGATCGTGTTTAAAGCCAAAGACGGGCAG ATCACGCATGGGAAACACCAAAAATGGATAGACTTGCCTCGCAACATGTTAAAAACCATGTTCATGCAAGAAGCGCAAAA AGCATGCTTAGGCGTGGCTTTGCCCCCTTATGGCGCGGGCGCACCAACTTATGCAGTTCGTTTTACGATCTTATCGTTTT CTCTTTTAGAAAAAGAAAATTCTACCTATAGGGCGGAATTTGCACTAGGCTATGATATTAGCGTGAAAGGCGATTCGCAT TCTGGAGTGATCATTAAGCATGAAAATATTTCTAGCTTGGAAAACAAAACGACCAAAACGACTAAAGATGGCAATCAAGA TTTTCAAGAAAGCGCGATACAATCCCTCCAACATGTAAGCGAACAAGCGATGCAAGAAGCGATTTCCTTGATTAAAAAAG CGGTTGAAGCGCAAAGCGTAAGCCCGTTAAAAAAATAA
Upstream 100 bases:
>100_bases GCTTGAGAAACATTGATAATTTTGTGGAAAAAGGCTCTGCTTTGATAGACAAATTTGACGCTAACCCCTATAAAACGATT TTTGGAGAAAGGAAATAATC
Downstream 100 bases:
>100_bases AACATAAGGAGGAATTGTTTGAATTTACGATTGGCTGGAGCAAGCGTTTTAACGGCTTGTGTCTTTTCTGGGTGTTTTTT TTTAAAAATGTTTGATAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 225; Mature: 225
Protein sequence:
>225_residues MRATAIKIFSLSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEITQCPKPLTEVRLISILSADLFNTKEIVFKAKDGQ ITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAGAPTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSH SGVIIKHENISSLENKTTKTTKDGNQDFQESAIQSLQHVSEQAMQEAISLIKKAVEAQSVSPLKK
Sequences:
>Translated_225_residues MRATAIKIFSLSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEITQCPKPLTEVRLISILSADLFNTKEIVFKAKDGQ ITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAGAPTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSH SGVIIKHENISSLENKTTKTTKDGNQDFQESAIQSLQHVSEQAMQEAISLIKKAVEAQSVSPLKK >Mature_225_residues MRATAIKIFSLSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEITQCPKPLTEVRLISILSADLFNTKEIVFKAKDGQ ITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAGAPTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSH SGVIIKHENISSLENKTTKTTKDGNQDFQESAIQSLQHVSEQAMQEAISLIKKAVEAQSVSPLKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24921; Mature: 24921
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRATAIKIFSLSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEITQCPKPLTEVRLIS CCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEECCCCCCHHHHHHHHH ILSADLFNTKEIVFKAKDGQITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAG HHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC APTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKT CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCEEEEECCHHHHHHCCCCC TKDGNQDFQESAIQSLQHVSEQAMQEAISLIKKAVEAQSVSPLKK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRATAIKIFSLSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEITQCPKPLTEVRLIS CCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEECCCCCCHHHHHHHHH ILSADLFNTKEIVFKAKDGQITHGKHQKWIDLPRNMLKTMFMQEAQKACLGVALPPYGAG HHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC APTYAVRFTILSFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKT CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCEEEEECCHHHHHHCCCCC TKDGNQDFQESAIQSLQHVSEQAMQEAISLIKKAVEAQSVSPLKK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA