| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528234
Identifier: 188528234
GI number: 188528234
Start: 1453443
End: 1454030
Strand: Reverse
Name: 188528234
Synonym: HPSH_07490
Alternate gene names: NA
Gene position: 1454030-1453443 (Counterclockwise)
Preceding gene: 188528235
Following gene: 188528233
Centisome position: 90.39
GC content: 37.07
Gene sequence:
>588_bases TTGAATTTACGATTGGCTGGAGCAAGCGTTTTAACGGCTTGTGTCTTTTCTGGGTGTTTTTTTTTAAAAATGTTTGATAA AAAACTTTCTAGCAATGATTGGCATATCCAAAAAGTAGAAATGAACCATCAAGTGTATGACATTGAAACCATGCTCGCTG ATAGCGCTTTTAGAGAGCATGAAGAAGAGCAAGATTCTTCTCTAAATACCGCTTTACCTGAGGATAAGACAGCGCTTGAA GCCAAAGAGCAGGAGCAAAAAGAAAAAAGAAAACACTGGTATGAGCTTTTTAAAAAGAAGCCAAAGCCTAAAAGCTCTAT GGGAGAGTTTGTGTTTGACCAAAAAGAAAATCGTATTTATGGCAAAGGCTATTGCAACCGGTATTTTGCCAGCTATGTAT GGCAGGGCGATAGGCACATTGGAATTGAAGATAGCGGGATTTCAAGAAAAGTGTGTAAAGATGAGCATTTAATGGCGTTT GAATTGGAATTTATGGAGAATTTTAAGGGTAATTTTACGGTAACTAAGGGCAAGGACACGCTCATTTTAGACAACCAAAA AATGAAAATTTATTTGAAAACGCCTTGA
Upstream 100 bases:
>100_bases AAGCGAACAAGCGATGCAAGAAGCGATTTCCTTGATTAAAAAAGCGGTTGAAGCGCAAAGCGTAAGCCCGTTAAAAAAAT AAAACATAAGGAGGAATTGT
Downstream 100 bases:
>100_bases AATGGGTTTTTGATTTCAACAATCTAAAACCACTAAATTAGGGATTAAAAAGAAATTTTTGATCGCTTTTTAAGAGGTTA TCGCTTGCTTTTGGCTTTTT
Product: putative secreted motility protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 195; Mature: 195
Protein sequence:
>195_residues MNLRLAGASVLTACVFSGCFFLKMFDKKLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTALE AKEQEQKEKRKHWYELFKKKPKPKSSMGEFVFDQKENRIYGKGYCNRYFASYVWQGDRHIGIEDSGISRKVCKDEHLMAF ELEFMENFKGNFTVTKGKDTLILDNQKMKIYLKTP
Sequences:
>Translated_195_residues MNLRLAGASVLTACVFSGCFFLKMFDKKLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTALE AKEQEQKEKRKHWYELFKKKPKPKSSMGEFVFDQKENRIYGKGYCNRYFASYVWQGDRHIGIEDSGISRKVCKDEHLMAF ELEFMENFKGNFTVTKGKDTLILDNQKMKIYLKTP >Mature_195_residues MNLRLAGASVLTACVFSGCFFLKMFDKKLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTALE AKEQEQKEKRKHWYELFKKKPKPKSSMGEFVFDQKENRIYGKGYCNRYFASYVWQGDRHIGIEDSGISRKVCKDEHLMAF ELEFMENFKGNFTVTKGKDTLILDNQKMKIYLKTP
Specific function: Unknown
COG id: COG3187
COG function: function code O; Heat shock protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22892; Mature: 22892
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLRLAGASVLTACVFSGCFFLKMFDKKLSSNDWHIQKVEMNHQVYDIETMLADSAFREH CCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEHHHHHHHHHHHHHH EEEQDSSLNTALPEDKTALEAKEQEQKEKRKHWYELFKKKPKPKSSMGEFVFDQKENRIY HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEE GKGYCNRYFASYVWQGDRHIGIEDSGISRKVCKDEHLMAFELEFMENFKGNFTVTKGKDT CCHHHHHHHHHHHCCCCCEECCCCCCCCHHHCCCCCEEEEEEHHHHCCCCCEEEECCCCE LILDNQKMKIYLKTP EEEECCEEEEEEECC >Mature Secondary Structure MNLRLAGASVLTACVFSGCFFLKMFDKKLSSNDWHIQKVEMNHQVYDIETMLADSAFREH CCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEHHHHHHHHHHHHHH EEEQDSSLNTALPEDKTALEAKEQEQKEKRKHWYELFKKKPKPKSSMGEFVFDQKENRIY HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEE GKGYCNRYFASYVWQGDRHIGIEDSGISRKVCKDEHLMAFELEFMENFKGNFTVTKGKDT CCHHHHHHHHHHHCCCCCEECCCCCCCCHHHCCCCCEEEEEEHHHHCCCCCEEEECCCCE LILDNQKMKIYLKTP EEEECCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA