Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

Click here to switch to the map view.

The map label for this gene is 188528182

Identifier: 188528182

GI number: 188528182

Start: 1407500

End: 1408603

Strand: Direct

Name: 188528182

Synonym: HPSH_07215

Alternate gene names: NA

Gene position: 1407500-1408603 (Clockwise)

Preceding gene: 188528181

Following gene: 188528189

Centisome position: 87.5

GC content: 38.68

Gene sequence:

>1104_bases
ATGGATGCGCAAACTTTACAAAATCAAATTATCCCTATTTTTATGAGTTTTGATAAGAATTACGCGCTAGGGGCTGGCGT
GAGCCTTTATTCTTTACTTTCACATGCGAGCAGGCACACAAGCGCGATAGATTTTAGCCCCTTAAGTCAAAACAACGAGC
TTTTAGGCGCTAACATCGTGTATAAAATCCATTGTTTGATTAAAGGCGTCACTTTAGAGCAACAAAACAAGCTTTTAAAA
ACCCTTGAGCCTTTTAAAAAATTCGCTTCATTGGAGTTCATAGACATTAACTCGCTAGATCATTCCATAGAAAGCTACCT
TAATGAGTCTTGTTCCAAGCGTTATGGCGGGCTTCTTGTTTTGTGCCGGCTTTTGCTCGCTTCACTCTTCCCTGATTATT
CTAAAATCATTTCTATAGATGTGGATACGGTGTTTTTGGGCGATGTTGCAAGCGCTTATTTTGCACTAGATAACGACCCC
ACTAAATCACTTGGCATGGTGAGAGACACTTTTTCCCACCTTCCTTTTGAAGCCTTTTGTCATTTTTGCAAGCGTGCTTG
TAAGAATTTTAAAATGGATTTTTCACGCTTTAGCCCAAACGAATTAAAACGCATTCACCAAGGCTTTAACATGGGCTTTT
TGGTGGCGCATCTGGATCGGTGGCGCCAAGACGGGTTTGAAAAGATCGCTTTAGAGTTTTTGAAAGCTAGGGGGAAAGAC
CTTTTCTACCCTGAGCAGTGTTTGGTTAATATGGTGTTTTGGGAGCGCATTTTAGAATTGCCTATTTATTATAATTGCTA
TTCTGACTTTTTCAACCAGCACTACCCTAAAAATATCATCATGCTCCATTTCATCAAATACAAGCCGTGGCGTTCTGTCA
GTTCTTTGAACGGGCGTTTGATTTGCTATGAAGCTGAAGCGAGTTTTTGGCTTGCAAACCTTTTTTGCACCCCTTTCAAA
AACGATTTTTTGAAAGAACGCCTTGAAATGGCTAAAGACCAACAAATGCACTCTTTTAAAACCCACATCAGATCGCAAAC
TATTAGAAATTATTTTTATTTTAGGGTAAAAAATATTTTGAAAAAAATTTTCAAACTCTCTTAA

Upstream 100 bases:

>100_bases
TTCAATAAAACCCAATTCAATAACCTTTACACAGGAAGCGTTGGAGAAGTTAGGCATGCGATTTTAAACCACTCAAAAAG
CGCTATTAAAGGATAATCTA

Downstream 100 bases:

>100_bases
AGGACCTTCATGGAAAAACGATTGAAGTTTTTAAAATTCTTTGCAAAGAGCGTCATTTTAGATGAAAATTTTTTAATTTT
CCTTCTTTGCAACGCTCTTT

Product: lipopolysaccharide 1,2-glucosyltransferase

Products: NA

Alternate protein names: Lipopolysaccharide 1 2-Glucosyltransferase; LPS 1 2-Glycosyltransferase; Lps Biosynthesis Protein; Glycosyl Transferase Family Protein; Lipopolysaccharide 1 2-Glycosyltransferase

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MDAQTLQNQIIPIFMSFDKNYALGAGVSLYSLLSHASRHTSAIDFSPLSQNNELLGANIVYKIHCLIKGVTLEQQNKLLK
TLEPFKKFASLEFIDINSLDHSIESYLNESCSKRYGGLLVLCRLLLASLFPDYSKIISIDVDTVFLGDVASAYFALDNDP
TKSLGMVRDTFSHLPFEAFCHFCKRACKNFKMDFSRFSPNELKRIHQGFNMGFLVAHLDRWRQDGFEKIALEFLKARGKD
LFYPEQCLVNMVFWERILELPIYYNCYSDFFNQHYPKNIIMLHFIKYKPWRSVSSLNGRLICYEAEASFWLANLFCTPFK
NDFLKERLEMAKDQQMHSFKTHIRSQTIRNYFYFRVKNILKKIFKLS

Sequences:

>Translated_367_residues
MDAQTLQNQIIPIFMSFDKNYALGAGVSLYSLLSHASRHTSAIDFSPLSQNNELLGANIVYKIHCLIKGVTLEQQNKLLK
TLEPFKKFASLEFIDINSLDHSIESYLNESCSKRYGGLLVLCRLLLASLFPDYSKIISIDVDTVFLGDVASAYFALDNDP
TKSLGMVRDTFSHLPFEAFCHFCKRACKNFKMDFSRFSPNELKRIHQGFNMGFLVAHLDRWRQDGFEKIALEFLKARGKD
LFYPEQCLVNMVFWERILELPIYYNCYSDFFNQHYPKNIIMLHFIKYKPWRSVSSLNGRLICYEAEASFWLANLFCTPFK
NDFLKERLEMAKDQQMHSFKTHIRSQTIRNYFYFRVKNILKKIFKLS
>Mature_367_residues
MDAQTLQNQIIPIFMSFDKNYALGAGVSLYSLLSHASRHTSAIDFSPLSQNNELLGANIVYKIHCLIKGVTLEQQNKLLK
TLEPFKKFASLEFIDINSLDHSIESYLNESCSKRYGGLLVLCRLLLASLFPDYSKIISIDVDTVFLGDVASAYFALDNDP
TKSLGMVRDTFSHLPFEAFCHFCKRACKNFKMDFSRFSPNELKRIHQGFNMGFLVAHLDRWRQDGFEKIALEFLKARGKD
LFYPEQCLVNMVFWERILELPIYYNCYSDFFNQHYPKNIIMLHFIKYKPWRSVSSLNGRLICYEAEASFWLANLFCTPFK
NDFLKERLEMAKDQQMHSFKTHIRSQTIRNYFYFRVKNILKKIFKLS

Specific function: Unknown

COG id: COG1442

COG function: function code M; Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42938; Mature: 42938

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAQTLQNQIIPIFMSFDKNYALGAGVSLYSLLSHASRHTSAIDFSPLSQNNELLGANIV
CCHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHH
YKIHCLIKGVTLEQQNKLLKTLEPFKKFASLEFIDINSLDHSIESYLNESCSKRYGGLLV
EEEEHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCCHHH
LCRLLLASLFPDYSKIISIDVDTVFLGDVASAYFALDNDPTKSLGMVRDTFSHLPFEAFC
HHHHHHHHHCCCCHHEEEECCCCEEHHHHHHHHEEECCCCCHHHHHHHHHHHHCCHHHHH
HFCKRACKNFKMDFSRFSPNELKRIHQGFNMGFLVAHLDRWRQDGFEKIALEFLKARGKD
HHHHHHHHCCCCCHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LFYPEQCLVNMVFWERILELPIYYNCYSDFFNQHYPKNIIMLHFIKYKPWRSVSSLNGRL
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHCCCCEE
ICYEAEASFWLANLFCTPFKNDFLKERLEMAKDQQMHSFKTHIRSQTIRNYFYFRVKNIL
EEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKIFKLS
HHHHCCC
>Mature Secondary Structure
MDAQTLQNQIIPIFMSFDKNYALGAGVSLYSLLSHASRHTSAIDFSPLSQNNELLGANIV
CCHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHH
YKIHCLIKGVTLEQQNKLLKTLEPFKKFASLEFIDINSLDHSIESYLNESCSKRYGGLLV
EEEEHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCCHHH
LCRLLLASLFPDYSKIISIDVDTVFLGDVASAYFALDNDPTKSLGMVRDTFSHLPFEAFC
HHHHHHHHHCCCCHHEEEECCCCEEHHHHHHHHEEECCCCCHHHHHHHHHHHHCCHHHHH
HFCKRACKNFKMDFSRFSPNELKRIHQGFNMGFLVAHLDRWRQDGFEKIALEFLKARGKD
HHHHHHHHCCCCCHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LFYPEQCLVNMVFWERILELPIYYNCYSDFFNQHYPKNIIMLHFIKYKPWRSVSSLNGRL
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHCCCCEE
ICYEAEASFWLANLFCTPFKNDFLKERLEMAKDQQMHSFKTHIRSQTIRNYFYFRVKNIL
EEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKIFKLS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA