| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188528189
Identifier: 188528189
GI number: 188528189
Start: 1416612
End: 1417232
Strand: Direct
Name: 188528189
Synonym: HPSH_07265
Alternate gene names: NA
Gene position: 1416612-1417232 (Clockwise)
Preceding gene: 188528182
Following gene: 188528195
Centisome position: 88.07
GC content: 42.67
Gene sequence:
>621_bases TTGAAGTTTCAAATTGTGAGTTTGTTAGCCGCTCTTTTATTAACCTCTTGCTTGCCTCCTAAAGGCCATCATTCTGGTTT GGTGAATCTTTATATCGCTCATCAAGGCCAAAGCGTGCGCACTTATTGGCGCAAAGTGGATAGAGAAGTTGTCGCCAAAC ACAATGAAGCGCTTAAAAAAAACCCTAAAGCAAAGCTCAAAGACCCTAGGGGGCCTTTATTCATGCTAGGGAGTGAGCGC TTCATGCTCTTATGGAAAAACCGCTACGCTTTAGCCAAACCCCAATCGTTCAAGCTAGAGCCTGGGTTTTATTACTTGGA TTCTTTTAGCGTGGAAACCCAAAAAGGCATCTTGCAAAGCGCCCCTGGCTATTCATACACCAAAAATGGCTATGATTTCA AAAACAACCGCCCCTTTTTCCTAGCCTTTGAAGTCAAACCTGATAGCAAAATCATTCTTCCTAGCGTGGAATTGAGCCTG ATTAAAACCCCTAGAGGCTTTTTAGGGGTGTTTTTGTTTGATAATAATGAAAAGGGGGCTAACGCTAAGTGGATTGAGGG GAGTTTGAATTTAAAGCTTAAAAACGCTTCCTTTAAAGACGCATGGGGGTTGGAACCATAA
Upstream 100 bases:
>100_bases CGTTTATTTTACCCTATTCTTTAAGTTTTTATCCATAACTTATAAGGGTTTTAGTTTTAGCATGCTAGCATTCAGCCACC ACTCTTTTTAAGGAATTTGT
Downstream 100 bases:
>100_bases AGCGCAAGGCTTTGTTTTATGAAGCGTTGGTATTAAACTTCCTTTTATTTTAGTTTTCTTGTGTCTTTGGAATGTAGGTT ATAATTTCTATCGTTTGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MKFQIVSLLAALLLTSCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDREVVAKHNEALKKNPKAKLKDPRGPLFMLGSER FMLLWKNRYALAKPQSFKLEPGFYYLDSFSVETQKGILQSAPGYSYTKNGYDFKNNRPFFLAFEVKPDSKIILPSVELSL IKTPRGFLGVFLFDNNEKGANAKWIEGSLNLKLKNASFKDAWGLEP
Sequences:
>Translated_206_residues MKFQIVSLLAALLLTSCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDREVVAKHNEALKKNPKAKLKDPRGPLFMLGSER FMLLWKNRYALAKPQSFKLEPGFYYLDSFSVETQKGILQSAPGYSYTKNGYDFKNNRPFFLAFEVKPDSKIILPSVELSL IKTPRGFLGVFLFDNNEKGANAKWIEGSLNLKLKNASFKDAWGLEP >Mature_206_residues MKFQIVSLLAALLLTSCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDREVVAKHNEALKKNPKAKLKDPRGPLFMLGSER FMLLWKNRYALAKPQSFKLEPGFYYLDSFSVETQKGILQSAPGYSYTKNGYDFKNNRPFFLAFEVKPDSKIILPSVELSL IKTPRGFLGVFLFDNNEKGANAKWIEGSLNLKLKNASFKDAWGLEP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23427; Mature: 23427
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFQIVSLLAALLLTSCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDREVVAKHNEALKK CCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC NPKAKLKDPRGPLFMLGSERFMLLWKNRYALAKPQSFKLEPGFYYLDSFSVETQKGILQS CCCCCCCCCCCCEEEECCCEEEEEEECCEEEECCCCEEECCCEEEEEECCCCHHHHHHHC APGYSYTKNGYDFKNNRPFFLAFEVKPDSKIILPSVELSLIKTPRGFLGVFLFDNNEKGA CCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCEEEEEECCCCCEEEEEEECCCCCC NAKWIEGSLNLKLKNASFKDAWGLEP CCEEEECEEEEEEECCCCCCCCCCCC >Mature Secondary Structure MKFQIVSLLAALLLTSCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDREVVAKHNEALKK CCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC NPKAKLKDPRGPLFMLGSERFMLLWKNRYALAKPQSFKLEPGFYYLDSFSVETQKGILQS CCCCCCCCCCCCEEEECCCEEEEEEECCEEEECCCCEEECCCEEEEEECCCCHHHHHHHC APGYSYTKNGYDFKNNRPFFLAFEVKPDSKIILPSVELSLIKTPRGFLGVFLFDNNEKGA CCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCEEEEEECCCCCEEEEEEECCCCCC NAKWIEGSLNLKLKNASFKDAWGLEP CCEEEECEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA