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The map label for this gene is ompA [H]

Identifier: 188527909

GI number: 188527909

Start: 1142526

End: 1143077

Strand: Reverse

Name: ompA [H]

Synonym: HPSH_05800

Alternate gene names: 188527909

Gene position: 1143077-1142526 (Counterclockwise)

Preceding gene: 188527910

Following gene: 188527908

Centisome position: 71.06

GC content: 39.49

Gene sequence:

>552_bases
ATGAAAAGATCTTCTGTATTTAGTTTCTTGGTAGCTTTTTTGTTCATAGCTGGTTGTAAGCACAACATGGATAAAGAAGC
CGTGGCTGGTGATGTGAGCGCTAAAGCGGTTCAAAGCGCGCCTGTTTCTACAGAAACAGTTCAAGAAAAACAAGAACCTA
AAGAGGAGCCTAAACAAGAGCCAGCTCCAGTGGTTGAAGAAAAGCCGGCTGTTGAGAGCGGGACTATAATCGCTTCTATT
TATTTTGATTTTGACAAGTATGAGATCAAAGAATCCGATCAAGAGACTTTAGATGAGATCGTGCAAAAAGCTAAAGAAAA
CCACATGCAAGTGCTTTTGGAAGGCAATACCGATGAATTTGGCTCTAGCGAATACAACCAAGCGCTTGGCGTTAAAAGGA
CTTTGAGCGTGAAAAACGCTTTAATCATTAAAGGGGTAGAAAAAGATATGATCAAAACCATCAGTTTTGGTGAAACCAAA
CCCAAATGCACCCAAAAAACTAAAGAATGCTACAAAGAAAACAGAAGAGTGGATGTCAAATTAGTGAAGTAA

Upstream 100 bases:

>100_bases
AAAGAATGTGAAAATACAAGCCTTTGATTGGTAAGGTTAGATTAAGCGAATATGAGTTAATATTGACACTTATTAAAATT
TTATTCTTGGAGAATTTATT

Downstream 100 bases:

>100_bases
TTCTAGGATGAAAAGGCTTTTTTTTATCCCTTTTATCGCTCCCTTTTTTCTCAATGGGGAGCCTTCAGCGTTTGATTTGC
AAAGCGGGGCTACCAAAAAA

Product: peptidoglycan-associated lipoprotein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKRSSVFSFLVAFLFIAGCKHNMDKEAVAGDVSAKAVQSAPVSTETVQEKQEPKEEPKQEPAPVVEEKPAVESGTIIASI
YFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALIIKGVEKDMIKTISFGETK
PKCTQKTKECYKENRRVDVKLVK

Sequences:

>Translated_183_residues
MKRSSVFSFLVAFLFIAGCKHNMDKEAVAGDVSAKAVQSAPVSTETVQEKQEPKEEPKQEPAPVVEEKPAVESGTIIASI
YFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALIIKGVEKDMIKTISFGETK
PKCTQKTKECYKENRRVDVKLVK
>Mature_183_residues
MKRSSVFSFLVAFLFIAGCKHNMDKEAVAGDVSAKAVQSAPVSTETVQEKQEPKEEPKQEPAPVVEEKPAVESGTIIASI
YFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALIIKGVEKDMIKTISFGETK
PKCTQKTKECYKENRRVDVKLVK

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=38.7755102040816, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 20510; Mature: 20510

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSSVFSFLVAFLFIAGCKHNMDKEAVAGDVSAKAVQSAPVSTETVQEKQEPKEEPKQE
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHCHHCCCCCC
PAPVVEEKPAVESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEF
CCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCC
GSSEYNQALGVKRTLSVKNALIIKGVEKDMIKTISFGETKPKCTQKTKECYKENRRVDVK
CCHHHHHHHCCHHHHHHHHHHEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEE
LVK
EEC
>Mature Secondary Structure
MKRSSVFSFLVAFLFIAGCKHNMDKEAVAGDVSAKAVQSAPVSTETVQEKQEPKEEPKQE
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHCHHCCCCCC
PAPVVEEKPAVESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKENHMQVLLEGNTDEF
CCCCCCCCCCCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCC
GSSEYNQALGVKRTLSVKNALIIKGVEKDMIKTISFGETKPKCTQKTKECYKENRRVDVK
CCHHHHHHHCCHHHHHHHHHHEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEE
LVK
EEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]