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The map label for this gene is tolB

Identifier: 188527910

GI number: 188527910

Start: 1143144

End: 1144397

Strand: Reverse

Name: tolB

Synonym: HPSH_05805

Alternate gene names: 188527910

Gene position: 1144397-1143144 (Counterclockwise)

Preceding gene: 188527911

Following gene: 188527909

Centisome position: 71.14

GC content: 37.64

Gene sequence:

>1254_bases
ATGAGGTATTTATGGCTTTTTTTAATATGCACTATAGGGCTTTTTGCAACAGATAAAACACTAGATATTATTAAAACCAT
TCAAAAACTTCCTAAGATTGAAGTGCGCTACTCTATAGATAACGATGCCAATTACGCTTTAAAATTGCATGAAGTCTTGG
CGAATGATTTAAGGACCAGCCAGCATTTTGATGTTTCTCAAAACAAGGAGCAAGGCGCTATCAATTACGCAGAACTCAAG
GATAAAAAAGTCCATCTTGTAGCGCTTGTGAGTGTGGCGGTAGAAAACGGCAATAAAATTTCACGATTAAAACTTTATGA
TGTGGATACAGAAACGCTCAAAAAGACTTTTGACTACCCCATTTTAAGTTCAGATTTATACCCTTTTGCAGCGCACAACA
TGGCCATTGTGGTGAATGATTATTTAAAAGCCCCTTCTATCGCTTGGATGAAGCGTCTCATTGTTTTTTCTAAATACATT
GGACCAGGAATCACAAACATCGCATTAGCCGATTATACGATGCGTTATCAAAAAGAAATCATCAAAAACAACAGGCTCAA
TATTTTCCCTAAATGGGCGAACGCTGAGCAAACGGAGTTTTATTACACGCAGTATGGCGAAAGAACGCCCATAATTTTAA
AATACAACATTCAAAAAGCCACTCATGAAAATATCGCTAGTTCTCAAGGAATGGCTGTGGTTTCTAGCGTGAGTTCTGAT
GGCTCTAAAATTTTAATGTCTTTAGCTCCTGATGGCCAACCGGATGTGTATTTGTATGACACGCATAAAAAAACGAAAAC
CAAAATAACGCGCTATCCTGGGATAGATGTTTCAGGAGTGTTTTTAGAAGATGACAAGTCTATGGCTTTTGTTTCGGATA
GATCCGGTTATCCTAACATCTACATGAAGAAATTGGGGTTAAAAGAGAGCGCGGAGCAACTCCTTTATGAAGGAAGAAGC
AATGAATCCATTGACGCTTATAAAGATAGCATTGTGTATGTGAGCAGGGAAAACCTTAATGAATTTGGCAAAACGGTGTT
TAATTTGAATTTGATCACTCTAAACAGCAAATATATCCGTAGGCTTACCGTGAATGGCTCCAACCAGATGCCTCGTTTTT
CTATGGATGGGAGGAATATCATGTATATCAAAAAGACACCCCAAGAATACGCCATGGGGCTTATTTTGCTAGACTATAAT
CAGAGTTTTTTATTCCCTTTAAAGAATGTGAAAATACAAGCCTTTGATTGGTAA

Upstream 100 bases:

>100_bases
TGATAACCCTTTTAGATGATTTAAAGAAAGTGGATTTCCCCCCATATCCTGGAGGAAACATGATTTCTATTAAAGTTAAT
TTCACCACTAAGGAAGAACA

Downstream 100 bases:

>100_bases
GGTTAGATTAAGCGAATATGAGTTAATATTGACACTTATTAAAATTTTATTCTTGGAGAATTTATTATGAAAAGATCTTC
TGTATTTAGTTTCTTGGTAG

Product: translocation protein TolB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MRYLWLFLICTIGLFATDKTLDIIKTIQKLPKIEVRYSIDNDANYALKLHEVLANDLRTSQHFDVSQNKEQGAINYAELK
DKKVHLVALVSVAVENGNKISRLKLYDVDTETLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYI
GPGITNIALADYTMRYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPIILKYNIQKATHENIASSQGMAVVSSVSSD
GSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRS
NESIDAYKDSIVYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN
QSFLFPLKNVKIQAFDW

Sequences:

>Translated_417_residues
MRYLWLFLICTIGLFATDKTLDIIKTIQKLPKIEVRYSIDNDANYALKLHEVLANDLRTSQHFDVSQNKEQGAINYAELK
DKKVHLVALVSVAVENGNKISRLKLYDVDTETLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYI
GPGITNIALADYTMRYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPIILKYNIQKATHENIASSQGMAVVSSVSSD
GSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRS
NESIDAYKDSIVYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN
QSFLFPLKNVKIQAFDW
>Mature_417_residues
MRYLWLFLICTIGLFATDKTLDIIKTIQKLPKIEVRYSIDNDANYALKLHEVLANDLRTSQHFDVSQNKEQGAINYAELK
DKKVHLVALVSVAVENGNKISRLKLYDVDTETLKKTFDYPILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYI
GPGITNIALADYTMRYQKEIIKNNRLNIFPKWANAEQTEFYYTQYGERTPIILKYNIQKATHENIASSQGMAVVSSVSSD
GSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKSMAFVSDRSGYPNIYMKKLGLKESAEQLLYEGRS
NESIDAYKDSIVYVSRENLNEFGKTVFNLNLITLNSKYIRRLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYN
QSFLFPLKNVKIQAFDW

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tolB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR014167
- InterPro:   IPR007195
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40; PF04052 TolB_N [H]

EC number: NA

Molecular weight: Translated: 47879; Mature: 47879

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLWLFLICTIGLFATDKTLDIIKTIQKLPKIEVRYSIDNDANYALKLHEVLANDLRTS
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEEHHHHHHHHHHCCC
QHFDVSQNKEQGAINYAELKDKKVHLVALVSVAVENGNKISRLKLYDVDTETLKKTFDYP
CCCCCCCCCCCCCEEHHHHCCCCEEEEEEEEEHCCCCCEEEEEEEEECCHHHHHHHCCCC
ILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALADYTMRYQKEI
CCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH
IKNNRLNIFPKWANAEQTEFYYTQYGERTPIILKYNIQKATHENIASSQGMAVVSSVSSD
HCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHCCCCCEEEEEECCCC
GSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKSMAFVSDRSGYPNI
CCEEEEEECCCCCCCEEEEECCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCCCE
YMKKLGLKESAEQLLYEGRSNESIDAYKDSIVYVSRENLNEFGKTVFNLNLITLNSKYIR
EEECCCCHHHHHHHHHCCCCCCCCHHHCCEEEEEECCCHHHHCCEEEEEEEEEECCCEEE
RLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYNQSFLFPLKNVKIQAFDW
EEEECCCCCCCEEECCCCEEEEEECCCHHHCEEEEEEECCCCEEEEECCCEEEEECC
>Mature Secondary Structure
MRYLWLFLICTIGLFATDKTLDIIKTIQKLPKIEVRYSIDNDANYALKLHEVLANDLRTS
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEEHHHHHHHHHHCCC
QHFDVSQNKEQGAINYAELKDKKVHLVALVSVAVENGNKISRLKLYDVDTETLKKTFDYP
CCCCCCCCCCCCCEEHHHHCCCCEEEEEEEEEHCCCCCEEEEEEEEECCHHHHHHHCCCC
ILSSDLYPFAAHNMAIVVNDYLKAPSIAWMKRLIVFSKYIGPGITNIALADYTMRYQKEI
CCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH
IKNNRLNIFPKWANAEQTEFYYTQYGERTPIILKYNIQKATHENIASSQGMAVVSSVSSD
HCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHCCCCCEEEEEECCCC
GSKILMSLAPDGQPDVYLYDTHKKTKTKITRYPGIDVSGVFLEDDKSMAFVSDRSGYPNI
CCEEEEEECCCCCCCEEEEECCCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCCCE
YMKKLGLKESAEQLLYEGRSNESIDAYKDSIVYVSRENLNEFGKTVFNLNLITLNSKYIR
EEECCCCHHHHHHHHHCCCCCCCCHHHCCEEEEEECCCHHHHCCEEEEEEEEEECCCEEE
RLTVNGSNQMPRFSMDGRNIMYIKKTPQEYAMGLILLDYNQSFLFPLKNVKIQAFDW
EEEECCCCCCCEEECCCCEEEEEECCCHHHCEEEEEEECCCCEEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA