| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is fecA [H]
Identifier: 188527469
GI number: 188527469
Start: 656582
End: 658885
Strand: Direct
Name: fecA [H]
Synonym: HPSH_03435
Alternate gene names: 188527469
Gene position: 656582-658885 (Clockwise)
Preceding gene: 188527468
Following gene: 188527472
Centisome position: 40.82
GC content: 39.84
Gene sequence:
>2304_bases ATGAAAAGAATTTTAGTCTCTTTGGTTGTTTTGAGTCATAGCGCGCATGCTGTCAAAACTCATAATTTGGAAAGGGTAGA AGCTTCAGGAGTGGCTAACGATAAAGAAGCGCCTTTAAGCTGGAGGAGCAAGGAAGTGAGAAACTATATGGGTTCTCGCA CGGTGATTTCTAACAAGCAACTCACTAAAAGCGCCAATCAGAGCATTGAAGAAGCTTTGCAAAACGTGCCAGGCGTGCAT ATTAGAAACGCTACGGGTATTGGAGCTGTGCCTAGCTTTTCTGTTAGGGGGTTTGGTGGGGGGAGTTCAGGGCATTCCAA TACGGCTATGGTTTTAGTCAATGGGATCCCTATTTATGTTGCGCCCTATGTTGATATTAGCATTCCTATTTTCCCTGTAA CCTTTCAATCTGTAGATAGGATCAGCGTAACCAAGGGCGGGGAGAGCGTGCGTTATGGCCCTAATGTTTTTGGCGGTGTG ATTAATGTGATCACTAAGGGCATTCCTACCAAGTGGGAGAGTCAGGTGAGCGAGAGGGCCACTTTTTGGGGCAAATCTGA AAATGGGGGCTTTTTCAATCAAAATTCTAAAAACCTTGACAAGAGCTTAGCCAATAACATGCTTTTTGACACTTACTTAA GAACAGGGGGCATGATGAATAAGCATTTTGGAATCCAAGCTCAAGCCAACTGGCTCAAAGGGCAAGGGTTTAGATACAAC AGCCCTACGAACATTCAAAACTACATGCTAGATTCCTTGTATCAAATCAATGAGAGCAATAAGATCACTGCTTTTTTCCA ATACTATAATTATTTTATGGCAGACCCCGGATCTTTAGGTATAGCCGCTTACAATCAAAATCGTTTTCAAAACAACCGCC CTAATAACAATAAAAGCGGGAGAGCGAAGCGATGGGGGGCTGTGTATCAAAACTTTTTTGGGGATACGGATAAAATAGGT GGGGATTTCACTTTTAGCTACTATGGGCATGACATGTCAAGGGATTTTCAATTTGATTCTAATTTTTTGAATGTCAATAC CAATCCTAAATTAGGCCCTGTTTATACCGATCAAAATTATGCAGGATTTTTTATCTTTGATCATTTAAGGCGTTATATAA TGAATGCATTTGAGCCTAATTTGAACTTAGTTGTCAATACCAGTAAAGTTAAGCAAACTTTTAATGTGGGCATGCGTTTT ATGACAATGGATATGTATTTCAGGTTGGATCAAAGCACATGCGAAAAAACCGATATTATCAATGGGGTGTGCCACATGCC TCCTTTTGTTCTTTCTAAAAAACCCAGCAACAATCAAAACTTGTTCAACAACTATACAGCGGTATGGTTGAGCGATAAAA TAGAGCTTTTTGATTCTAAATTGGTGATAACTCCAGGGATTAGATACACTTTTTTGAACTATAACAACAAAGAGCCAGAA AAGCATGATTTTTCTGTATGGAATATTACAAAAAAGCGTCAAAACGAATGGAGTCCCGGCCTTAACATTGGCTATAAACC TATGGAAAATTGGATATGGTATGCGAACTACCGTCGCAGTTTTATCCCTCCACAACACACAATGCTAGGCATTACTAGGA CTAATTACAACCAAATTTTTAATGAAATTGAAGTGGGGCAACGCTATAGTTATAAAAATCTATTGAGCTTTAATACCAAT TATTTTGTGATTTTTGCCAATCGTTACTATGCGGGAGGCTATAGCCCACAGCCTATTAACGCTAGGAGTCAAGGGGTGGA ATTGGAATTGTATTACGCGCCAATTAGGGGTTTGCAATTTCATGTGGCTTACACTTACATTGATGCGCGCATCACTTCTA ACGCTGATGACATTGCTTATTATTTTACAGGTATTGTCAATAAACCCTTTGACATTAAAGGGAAGCGTTTGCCTTATGTG AGTCCTAACCAATTCATATTTGACATGATGTATACTTACAAGCACACGACTTTTGGTATCAGTAGCTATTTTTATAGTCG CGCTTATAGTTCCATGCTCAATCAAGCCAAAAGCCAAACCGTGTGCCTGCCCTTAAACCCAGAATACACAGGGGGTCTAG AATATGGTTGTAATTCTGTGGGGTTATTGCCCTTGTATTTTGTGTTGAATGTTCAAGTAAGCTCAGTTTTATGGCAAAGC GGTAGGCATAAAATCACAGGGAGTTTGCAAATCAATAACCTTTTCAACATGAAGTATTATTTTAGGGGAATTGGCACAAG CCCTACAGGAAGAGAGCCAGCGCCAGGGCGATCCATTACAGCGTATTTGAATTATGAGTTTTAA
Upstream 100 bases:
>100_bases TTTAAATAATAATTGTCTCAAAATTTAAGCTAAAACTAATAGTAGTTATTATAAATTCCACCTTGTTGTAAAAAAGAACA TTTTTCATAAAAGGTGGTAA
Downstream 100 bases:
>100_bases ACTAGCTTCAAGCTTTTATCGCTTGAATGCTTTTAATATTAAACCATTTTAAAACTCGCCACTAAATTTTCGGTCAATAA ATTAAACCCATCTACCAGAA
Product: iron(III) dicitrate transport protein
Products: NA
Alternate protein names: Iron(III) dicitrate transport protein fecA [H]
Number of amino acids: Translated: 767; Mature: 767
Protein sequence:
>767_residues MKRILVSLVVLSHSAHAVKTHNLERVEASGVANDKEAPLSWRSKEVRNYMGSRTVISNKQLTKSANQSIEEALQNVPGVH IRNATGIGAVPSFSVRGFGGGSSGHSNTAMVLVNGIPIYVAPYVDISIPIFPVTFQSVDRISVTKGGESVRYGPNVFGGV INVITKGIPTKWESQVSERATFWGKSENGGFFNQNSKNLDKSLANNMLFDTYLRTGGMMNKHFGIQAQANWLKGQGFRYN SPTNIQNYMLDSLYQINESNKITAFFQYYNYFMADPGSLGIAAYNQNRFQNNRPNNNKSGRAKRWGAVYQNFFGDTDKIG GDFTFSYYGHDMSRDFQFDSNFLNVNTNPKLGPVYTDQNYAGFFIFDHLRRYIMNAFEPNLNLVVNTSKVKQTFNVGMRF MTMDMYFRLDQSTCEKTDIINGVCHMPPFVLSKKPSNNQNLFNNYTAVWLSDKIELFDSKLVITPGIRYTFLNYNNKEPE KHDFSVWNITKKRQNEWSPGLNIGYKPMENWIWYANYRRSFIPPQHTMLGITRTNYNQIFNEIEVGQRYSYKNLLSFNTN YFVIFANRYYAGGYSPQPINARSQGVELELYYAPIRGLQFHVAYTYIDARITSNADDIAYYFTGIVNKPFDIKGKRLPYV SPNQFIFDMMYTYKHTTFGISSYFYSRAYSSMLNQAKSQTVCLPLNPEYTGGLEYGCNSVGLLPLYFVLNVQVSSVLWQS GRHKITGSLQINNLFNMKYYFRGIGTSPTGREPAPGRSITAYLNYEF
Sequences:
>Translated_767_residues MKRILVSLVVLSHSAHAVKTHNLERVEASGVANDKEAPLSWRSKEVRNYMGSRTVISNKQLTKSANQSIEEALQNVPGVH IRNATGIGAVPSFSVRGFGGGSSGHSNTAMVLVNGIPIYVAPYVDISIPIFPVTFQSVDRISVTKGGESVRYGPNVFGGV INVITKGIPTKWESQVSERATFWGKSENGGFFNQNSKNLDKSLANNMLFDTYLRTGGMMNKHFGIQAQANWLKGQGFRYN SPTNIQNYMLDSLYQINESNKITAFFQYYNYFMADPGSLGIAAYNQNRFQNNRPNNNKSGRAKRWGAVYQNFFGDTDKIG GDFTFSYYGHDMSRDFQFDSNFLNVNTNPKLGPVYTDQNYAGFFIFDHLRRYIMNAFEPNLNLVVNTSKVKQTFNVGMRF MTMDMYFRLDQSTCEKTDIINGVCHMPPFVLSKKPSNNQNLFNNYTAVWLSDKIELFDSKLVITPGIRYTFLNYNNKEPE KHDFSVWNITKKRQNEWSPGLNIGYKPMENWIWYANYRRSFIPPQHTMLGITRTNYNQIFNEIEVGQRYSYKNLLSFNTN YFVIFANRYYAGGYSPQPINARSQGVELELYYAPIRGLQFHVAYTYIDARITSNADDIAYYFTGIVNKPFDIKGKRLPYV SPNQFIFDMMYTYKHTTFGISSYFYSRAYSSMLNQAKSQTVCLPLNPEYTGGLEYGCNSVGLLPLYFVLNVQVSSVLWQS GRHKITGSLQINNLFNMKYYFRGIGTSPTGREPAPGRSITAYLNYEF >Mature_767_residues MKRILVSLVVLSHSAHAVKTHNLERVEASGVANDKEAPLSWRSKEVRNYMGSRTVISNKQLTKSANQSIEEALQNVPGVH IRNATGIGAVPSFSVRGFGGGSSGHSNTAMVLVNGIPIYVAPYVDISIPIFPVTFQSVDRISVTKGGESVRYGPNVFGGV INVITKGIPTKWESQVSERATFWGKSENGGFFNQNSKNLDKSLANNMLFDTYLRTGGMMNKHFGIQAQANWLKGQGFRYN SPTNIQNYMLDSLYQINESNKITAFFQYYNYFMADPGSLGIAAYNQNRFQNNRPNNNKSGRAKRWGAVYQNFFGDTDKIG GDFTFSYYGHDMSRDFQFDSNFLNVNTNPKLGPVYTDQNYAGFFIFDHLRRYIMNAFEPNLNLVVNTSKVKQTFNVGMRF MTMDMYFRLDQSTCEKTDIINGVCHMPPFVLSKKPSNNQNLFNNYTAVWLSDKIELFDSKLVITPGIRYTFLNYNNKEPE KHDFSVWNITKKRQNEWSPGLNIGYKPMENWIWYANYRRSFIPPQHTMLGITRTNYNQIFNEIEVGQRYSYKNLLSFNTN YFVIFANRYYAGGYSPQPINARSQGVELELYYAPIRGLQFHVAYTYIDARITSNADDIAYYFTGIVNKPFDIKGKRLPYV SPNQFIFDMMYTYKHTTFGISSYFYSRAYSSMLNQAKSQTVCLPLNPEYTGGLEYGCNSVGLLPLYFVLNVQVSSVLWQS GRHKITGSLQINNLFNMKYYFRGIGTSPTGREPAPGRSITAYLNYEF
Specific function: FecA is the outer membrane receptor protein in the Fe(3+) dicitrate transport system [H]
COG id: COG4772
COG function: function code P; Outer membrane receptor for Fe3+-dicitrate
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790743, Length=721, Percent_Identity=23.1622746185853, Blast_Score=144, Evalue=2e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87549; Mature: 87549
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRILVSLVVLSHSAHAVKTHNLERVEASGVANDKEAPLSWRSKEVRNYMGSRTVISNKQ CHHHHEEHHHHHCCCCEEECCCCHHEECCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCH LTKSANQSIEEALQNVPGVHIRNATGIGAVPSFSVRGFGGGSSGHSNTAMVLVNGIPIYV HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEEE APYVDISIPIFPVTFQSVDRISVTKGGESVRYGPNVFGGVINVITKGIPTKWESQVSERA EEEEEEEEEEEEEECCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHH TFWGKSENGGFFNQNSKNLDKSLANNMLFDTYLRTGGMMNKHFGIQAQANWLKGQGFRYN HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCCCEECC SPTNIQNYMLDSLYQINESNKITAFFQYYNYFMADPGSLGIAAYNQNRFQNNRPNNNKSG CCCCHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCC RAKRWGAVYQNFFGDTDKIGGDFTFSYYGHDMSRDFQFDSNFLNVNTNPKLGPVYTDQNY CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCEEEECCCCCCCCEEECCCC AGFFIFDHLRRYIMNAFEPNLNLVVNTSKVKQTFNVGMRFMTMDMYFRLDQSTCEKTDII CEEHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCEEEEEEEEEEEECCHHHHHHHHH NGVCHMPPFVLSKKPSNNQNLFNNYTAVWLSDKIELFDSKLVITPGIRYTFLNYNNKEPE CCHHCCCCCEECCCCCCCCCCCCCEEEEEEECCEEECCCEEEECCCCEEEEEECCCCCCC KHDFSVWNITKKRQNEWSPGLNIGYKPMENWIWYANYRRSFIPPQHTMLGITRTNYNQIF CCCCEEEEEEHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCHHHHH NEIEVGQRYSYKNLLSFNTNYFVIFANRYYAGGYSPQPINARSQGVELELYYAPIRGLQF HHHHHCCCCCCHHHEEECCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEE HVAYTYIDARITSNADDIAYYFTGIVNKPFDIKGKRLPYVSPNQFIFDMMYTYKHTTFGI EEEEEEEEEEEECCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH SSYFYSRAYSSMLNQAKSQTVCLPLNPEYTGGLEYGCNSVGLLPLYFVLNVQVSSVLWQS HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCCCCCCEEEEHHHHHHHHHHHHHC GRHKITGSLQINNLFNMKYYFRGIGTSPTGREPAPGRSITAYLNYEF CCEEEEEEEEECCEECEEEEEEECCCCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MKRILVSLVVLSHSAHAVKTHNLERVEASGVANDKEAPLSWRSKEVRNYMGSRTVISNKQ CHHHHEEHHHHHCCCCEEECCCCHHEECCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCH LTKSANQSIEEALQNVPGVHIRNATGIGAVPSFSVRGFGGGSSGHSNTAMVLVNGIPIYV HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCEEE APYVDISIPIFPVTFQSVDRISVTKGGESVRYGPNVFGGVINVITKGIPTKWESQVSERA EEEEEEEEEEEEEECCCCCEEEEECCCCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHH TFWGKSENGGFFNQNSKNLDKSLANNMLFDTYLRTGGMMNKHFGIQAQANWLKGQGFRYN HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCCCEECC SPTNIQNYMLDSLYQINESNKITAFFQYYNYFMADPGSLGIAAYNQNRFQNNRPNNNKSG CCCCHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCC RAKRWGAVYQNFFGDTDKIGGDFTFSYYGHDMSRDFQFDSNFLNVNTNPKLGPVYTDQNY CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCEEEECCCCCCCCEEECCCC AGFFIFDHLRRYIMNAFEPNLNLVVNTSKVKQTFNVGMRFMTMDMYFRLDQSTCEKTDII CEEHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCEEEEEEEEEEEECCHHHHHHHHH NGVCHMPPFVLSKKPSNNQNLFNNYTAVWLSDKIELFDSKLVITPGIRYTFLNYNNKEPE CCHHCCCCCEECCCCCCCCCCCCCEEEEEEECCEEECCCEEEECCCCEEEEEECCCCCCC KHDFSVWNITKKRQNEWSPGLNIGYKPMENWIWYANYRRSFIPPQHTMLGITRTNYNQIF CCCCEEEEEEHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCHHHHH NEIEVGQRYSYKNLLSFNTNYFVIFANRYYAGGYSPQPINARSQGVELELYYAPIRGLQF HHHHHCCCCCCHHHEEECCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEE HVAYTYIDARITSNADDIAYYFTGIVNKPFDIKGKRLPYVSPNQFIFDMMYTYKHTTFGI EEEEEEEEEEEECCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH SSYFYSRAYSSMLNQAKSQTVCLPLNPEYTGGLEYGCNSVGLLPLYFVLNVQVSSVLWQS HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCCCCCCEEEEHHHHHHHHHHHHHC GRHKITGSLQINNLFNMKYYFRGIGTSPTGREPAPGRSITAYLNYEF CCEEEEEEEEECCEECEEEEEEECCCCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2836368; 7610040; 9278503; 2254251; 2651410 [H]